1. Identification of plasma biomarker candidates in glioblastoma using an antibody-array-based proteomic approachKlemen Zupančič, Andrej Blejec, Ana Herman, Matija Veber, Urška Verbovšek, Marjan Koršič, Miomir Knežević, Primož Rožman, Tamara Lah Turnšek, Kristina Gruden, Helena Motaln, 2014, izvirni znanstveni članek Povzetek: Background. Glioblastoma multiforme (GBM) is a brain tumour with a very high patient mortality rate, with a median survival of 47 weeks. This might be improved by the identification of novel diagnostic, prognostic and predictive therapy-response biomarkers, preferentially through the monitoring of the patient blood. The aim of this study was to define the impact of GBM in terms of alterations of the plasma protein levels in these patients. Materials and methods. We used a commercially available antibody array that includes 656 antibodies to analyse blood plasma samples from 17 healthy volunteers in comparison with 17 blood plasma samples from patients with GBM. Results. We identified 11 plasma proteins that are statistically most strongly associated with the presence of GBM. These proteins belong to three functional signalling pathways: T-cell signalling and immune responses; cell adhesion and migration; and cell-cycle control and apoptosis. Thus, we can consider this identified set of proteins as potential diagnostic biomarker candidates for GBM. In addition, a set of 16 plasma proteins were significantly associated with the overall survival of these patients with GBM. Guanine nucleotide binding protein alpha (GNAO1) was associated with both GBM presence and survival of patients with GBM. Conclusions. Antibody array analysis represents a useful tool for the screening of plasma samples for potential cancer biomarker candidates in small-scale exploratory experiments; however, clinical validation of these candidates requires their further evaluation in a larger study on an independent cohort of patients.
Ključne besede: glioblastoma, proteomics, biomarker
Objavljeno v DiRROS: 16.04.2024; Ogledov: 73; Prenosov: 40
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3. Cathepsin H indirectly regulates morphogenetic protein-4 (BMP-4) in various human cell linesMatija Rojnik, Zala Jevnikar, Bojana Mirković, Damjan Janeš, Nace Zidar, Danijel Kikelj, Janko Kos, 2011, izvirni znanstveni članek Povzetek: Background. Cathepsin H is a cysteine protease considered to play a major role in tumor progression, however, its precise function in tumorigenesis is unclear. Cathepsin H was recently proposed to be involved in processing of bone morphogenetic protein 4 (BMP-4) in mice. In order to clarify whether cathepsin H also regulates BMP-4 in humans, its impact on BMP-4 expression, processing and degradation was investigated in prostate cancer (PC-3), osteosarcoma (HOS) and pro-monocytic (U937) human cell lines. Materials and methods. BMP-4 expression was founded to be regulated by cathepsin H using PCR array technology and confirmed by real time PCR. Immunoassays including Western blot and confocal microscopy were used to evaluate the influence of cathepsin H on BMP-4 processing. Results. In contrast to HOS, the expression of BMP-4 mRNA in U937 and PC3 cells was significantly decreased by cathepsin H. The different regulation of BMP-4 synthesis could be associated with the absence of the mature 28 kDa cathepsin H form in HOS cells, where only the intermediate 30 kDa form was observed. No co-localization of BMP-4 and cathepsin H was observed in human cell lines and the multistep processing of BMP-4 was not altered in the presence of specific cathepsin H inhibitor. Isolated cathepsin H does not cleave mature recombinant BMP-4, neither with its amino- nor its endopeptidase activity. Conclusions. Our results exclude direct proteolytic processing of BMP-4 by cathepsin H, however, they provide support for its involvement in the regulation of BMP-4 expression.
Objavljeno v DiRROS: 18.03.2024; Ogledov: 85; Prenosov: 43
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4. Cathepsin H indirectly regulates morphogenetic protein-4 (BMP-4) in various human cell linesMatija Rojnik, Zala Jevnikar, Bojana Mirković, Damjan Janeš, Nace Zidar, Danijel Kikelj, Janko Kos, 2011, izvirni znanstveni članek Povzetek: Background. Cathepsin H is a cysteine protease considered to play a major role in tumor progression, however, its precise function in tumorigenesis is unclear. Cathepsin H was recently proposed to be involved in processing of bone morphogenetic protein 4 (BMP-4) in mice. In order to clarify whether cathepsin H also regulates BMP-4 in humans, its impact on BMP-4 expression, processing and degradation was investigated in prostate cancer (PC-3), osteosarcoma (HOS) and pro-monocytic (U937) human cell lines. Materials and methods. BMP-4 expression was founded to be regulated by cathepsin H using PCR array technology and confirmed by real time PCR. Immunoassays including Western blot and confocal microscopy were used to evaluate the influence of cathepsin H on BMP-4 processing. Results. In contrast to HOS, the expression of BMP-4 mRNA in U937 and PC3 cells was significantly decreased by cathepsin H. The different regulation of BMP-4 synthesis could be associated with the absence of the mature 28 kDa cathepsin H form in HOS cells, where only the intermediate 30 kDa form was observed. No co-localization of BMP-4 and cathepsin H was observed in human cell lines and the multistep processing of BMP-4 was not altered in the presence of specific cathepsin H inhibitor. Isolated cathepsin H does not cleave mature recombinant BMP-4, neither with its amino- nor its endopeptidase activity. Conclusions. Our results exclude direct proteolytic processing of BMP-4 by cathepsin H, however, they provide support for its involvement in the regulation of BMP-4 expression.
Objavljeno v DiRROS: 18.03.2024; Ogledov: 93; Prenosov: 17
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7. Characterisation of the microstructure and defects during the direct energy deposition of hybrid Ti6Al4V in a low-quality atmosphereSimon Malej, Črtomir Donik, Matej Balažic, Matija Bizjak, Marko Kač, Matjaž Godec, 2023, izvirni znanstveni članek Ključne besede: direct energy deposition, Ti6Al4V, protective atmosphere
Objavljeno v DiRROS: 08.03.2024; Ogledov: 108; Prenosov: 56
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9. Influence of precipitation hardening on the mechanical properties of Co-Cr-Mo and Co-Cr-W-Mo dental alloysMarko Sedlaček, Katja Zupančič, Barbara Šetina, Borut Kosec, Matija Zorc, Aleš Nagode, 2023, izvirni znanstveni članek Ključne besede: Co-Cr alloys, microstructure analysis, hardness, wear resistance
Objavljeno v DiRROS: 01.02.2024; Ogledov: 184; Prenosov: 116
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10. O domorodnosti alpskega kozoroga v SlovenijiAndreja Nève Repe, Elena Bužan, Borut Toškan, Jernej Javornik, Boštjan Pokorny, Andrej Arih, Lars Zver, Maruša Prostor, Miha Krofel, Matija Stergar, Klemen Jerina, Hubert Potočnik, Rok Černe, Aleš Poljanec, 2023, strokovni članek Povzetek: Alpski kozorog (Capra ibex) je alpski endemit. Na območju Slovenije naj bi bila vrsta iztrebljena v drugi polovici 17. stoletja, globalno pa je bila zaradi prelova na robu izumrtja konec 19. stoletja. Preživela je le populacija na širšem območju parka Gran Paradiso na skrajnem zahodu Alp v Italiji. Zaradi naselitev in drugih varstvenih programov sedaj alpski kozorog živi v celotnih Alpah, vključno s Slovenijo. Vendar pri nas njegove populacije nazadujejo in so v zelo slabem stanju, kar je lahko rezultat več dejavnikov. Malo izvornih osebkov ob naselitvah, zgodovinska ozka grla in ločenost kolonij so povzročili parjenje v sorodstvu, kar je slabšalo genetsko stanje populacij in lahko negativno vpliva tudi na demografijo. K številčnemu zmanjševanju vrste so lahko prispevale tudi bolezni. Za dolgoročno ohranitev alpskega kozoroga v Sloveniji so nujni takojšnji aktivni ohranitveni ukrepi, pogoj pa je ustrezna opredelitev izvornosti vrste, saj je (bila) zaradi prejšnjih pomanjkljivih podatkov umeščena med tujerodne. V prispevku na podlagi arheo-zooloških, genetskih in preliminarnih habitatnih analiz utemeljujemo, da je v Sloveniji kozorog domorodna vrsta. V raziskavah smo pokazali, da je vrsta živela na ozemlju zdajšnje Slovenije v poznoantičnem in zgodnje srednjeveškem obdobju. Preliminarno smo določili tudi primernost in povezanost habitata kozoroga v slovenskem alpskem svetu ter nakazali verjetne potrebne ukrepe za ohranitev vrste v Sloveniji.
Ključne besede: Capra ibex, izvornost vrste, programi varstva, Alpe, habitat, genetika
Objavljeno v DiRROS: 09.01.2024; Ogledov: 236; Prenosov: 66
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