1. The genus Fomitopsis (Polyporales, Basidiomycota) reconsideredViacheslav Spirin, K. Runnel, J. Vlasák, I. Viner, M.D. Barrett, L. Ryvarden, Annarosa Bernicchia, B. Rivoire, A.M. Ainsworth, Tine Grebenc, 2024, izvirni znanstveni članek Povzetek: Based on seven- and three-gene datasets, we discuss four alternative approaches for a reclassification of Fomitopsidaceae (Polyporales, Basidiomycota). After taking into account morphological diversity in the family, we argue in favour of distinguishing three genera only, viz. Anthoporia, Antrodia and Fomitopsis. Fomitopsis becomes a large genus with 128 accepted species, containing almost all former Fomitopsis spp. and most species formerly placed in Antrodia, Daedalea and Laccocephalum. Genera Buglossoporus, Cartilosoma, Daedalea, Melanoporia, Neolentiporus, alongside twenty others, are treated as synonyms of Fomitopsis. This generic scheme allows for morphologically distinct genera in Fomitopsidaceae, unlike other schemes we considered. We provide arguments for retaining Fomitopsis and suppressing earlier (Daedalea, Caloporus) or simultaneously published generic names (Piptoporus) considered here as its synonyms. Taxonomy of nine species complexes in the genus is revised based on ITS, ITS + TEF1, ITS + TEF1 + RPB1 and ITS + TEF1 + RPB2 datasets. In total, 17 species are described as new to science, 26 older species are reinstated and 26 currently accepted species names are relegated to synonymy. A condensed identification key for all accepted species in the genus is provided.
Ključne besede: brown-rot fungi, new taxa, phylogeny, polypores, taxonomy
Objavljeno v DiRROS: 28.02.2024; Ogledov: 122; Prenosov: 60
 Celotno besedilo (12,89 MB)
Gradivo ima več datotek! Več... |
2. Congruence between vascular plants and bryophytes in response to ecological conditions in sustainably managed temperate forests (taxonomic- and trait-based levels)Lado Kutnar, Janez Kermavnar, Marko S. Sabovljević, 2023, izvirni znanstveni članek Povzetek: Vascular plant species (VP) and bryophytes (B) constitute a significant portion of forest biodiversity and respond to both management intensity and natural disturbances within forests. In this study, we investigated the cross-taxa congruence between understorey VP and B at both diversity and composition levels across a wide range of sustainably managed forests in Slovenia. The taxonomic and functional characteristics of the selected plant groups were studied, with a particular emphasis on ground-dwelling species. We employed a trait-based approach to examine the functional characteristics. On average, the species richness of B in sustainably managed temperate forests increased with the corresponding number of VP. Furthermore, a moderate positive correlation in species composition between the studied groups of ground-dwelling organisms was also observed. The ground-dwelling VP and B were congruent in terms of trait-based composition, which was influenced by soil reaction and nutrients and light availability, while trait-based diversity was only slightly similar in response to moisture. A negative correlation between the composition of stress-tolerant VP and B hemeroby was found, indicating forest environments with a low level of disturbance. This is likely due to the sustainable management of Slovenian forests, where climate change and natural disturbances have intensified in recent years. A cross-taxon comparison of the two groups at four different levels, namely taxonomic-based diversity and composition and trait-based diversity and composition, revealed varying degrees of congruence. It is therefore important to monitor the status and temporal trends of both groups from different aspects to draw reliable conclusions.
Ključne besede: understory, mosses, terricolous species, diversity, composition, taxonomy, life-history traits, environmental gradients, managed forest, ICP Forests program, Slovenia
Objavljeno v DiRROS: 10.10.2023; Ogledov: 456; Prenosov: 170
Celotno besedilo (2,04 MB)
Gradivo ima več datotek! Več... |
3. Combining physical and virtual worlds for motor-cognitive training interventions : position paper with guidelines on technology classification in movement-related researchLuka Šlosar, Claudia Voelcker-Rehage, Armin Paravlić, Ensar Abazović, Eling D. de Bruin, Uroš Marušič, 2022, pregledni znanstveni članek Povzetek: Efficient movements require intact motor and cognitive function. There is a growing literature on motor-cognitive interventions to improve the overall quality of life of healthy or diseased older people. For such interventions, novel technological advances are crucial not only in terms of motivation but also to improve the user experience in a multi-stimuli world, usually offered as a mixture of real and virtual environments. This article provides a classification system for movement-related research dealing with motor-cognitive interventions performed in different extents of a virtual environment. The classification is divided into three categories: (a) type of digital device with the associated degree of immersiveness provided; (b) presence or absence of a human-computer interaction; and (c) activity engagement during training, defined by activity >1.5 Metabolic Equivalent of task. Since virtual reality (VR) often categorizes different technologies under the same term, we propose a taxonomy of digital devices ranging from computer monitors and projectors to head-mounted VR technology. All immersive technologies that have developed rapidly in recent years are grouped under the umbrella term Extended Reality (XR). These include augmented reality (AR), mixed reality (MR), and VR, as well as all technologies that have yet to be developed. This technology has potential not only for gaming and entertainment, but also for research, motor-cognitive training programs, rehabilitation, telemedicine, etc. This position paper provides definitions, recommendations, and guidelines for future movement-related interventions based on digital devices, human-computer interactions, and physical engagement to use terms more consistently and contribute to a clearer understanding of their implications.
Ključne besede: extended reality, virtual reality, augmented reality, mixed reality, exergaming, taxonomy, classification
Objavljeno v DiRROS: 21.12.2022; Ogledov: 401; Prenosov: 202
Celotno besedilo (518,01 KB)
Gradivo ima več datotek! Več... |
4. Genomic insights into the Mycobacterium kansasii complex : an updateTomasz Jagielski, Paulina Borówka, Zofia Bakuła, Jakub Lach, Błażej Marciniak, Anna Brzostek, Jarosław Dziadek, Mikołaj Dziurzyński, Lian Pennings, Jakobus van Ingen, Marija Žolnir-Dovč, Dominik Strapagiel, 2020, izvirni znanstveni članek Povzetek: Only very recently, has it been proposed that the hitherto existing Mycobacteriumkansasii subtypes (I–VI) should be elevated, each, to a species rank. Consequently, the former M. kansasii subtypes have been denominated as Mycobacterium kansasii (former type I), Mycobacterium persicum (II), Mycobacterium pseudokansasii (III), Mycobacterium innocens (V), and Mycobacterium attenuatum (VI). The present work extends the recently published findings by using a three-pronged computational strategy, based on the alignment fraction-average nucleotide identity, genome-to-genome distance, and core-genome phylogeny, yet essentially independent and much larger sample, and thus delivers a more refined and complete picture of the M. kansasii complex. Furthermore, five canonical taxonomic markers were used, i.e., 16S rRNA, hsp65, rpoB, and tuf genes, as well as the 16S-23S rRNA intergenic spacer region (ITS). The three major methods produced highly concordant results, corroborating the view that each M. kansasii subtype does represent a distinct species. This work not only consolidates the position of five of the currently erected species, but also provides a description of the sixth one, i.e., Mycobacterium ostraviense sp. nov. to replace the former subtype IV. By showing a close genetic relatedness, amonophyletic origin, and overlapping phenotypes, our findings support the recognition of the M. kansasii complex (MKC), accommodating
all M. kansasii-derived species and Mycobacterium gastri. None of the most commonly used taxonomic markers was shown to accurately distinguish all the MKC species. Likewise, no species-specific phenotypic characteristics were found allowing for species differentiation within the complex, except the non-photochromogenicity of M. gastri.
To distinguish, most reliably, between the MKC species, and between M. kansasii and M. persicum in particular, whole-genome-based approaches should be applied. In the absence of clear differences in the distribution of the virulence-associated region of difference 1 genes among the M. kansasii-derived species, the pathogenic potential of each of these species can only be speculatively assessed based on their prevalence among the clinically relevant population. Large-scale molecular epidemiological studies are needed to provide a better understanding of the clinical significance and pathobiology of the MKC species. The results of the in vitro drug susceptibility profiling emphasize the priority of rifampicin administration in the treatment of MKC-induced infections, while
undermining the use of ethambutol, due to a high resistance to this drug.
Ključne besede: Mycobacteriumkansasii complex, Mycobacteriumostraviense sp. nov., non-tuberculous mycobacteria
(NTM), whole genome sequencing, taxonomy
Objavljeno v DiRROS: 31.07.2020; Ogledov: 1878; Prenosov: 1330
Celotno besedilo (10,22 MB)
Gradivo ima več datotek! Več... |
