1. Rotational dynamics of a protein under shear flow studied by the eckart frame formalismPetra Papež, Franci Merzel, Matej Praprotnik, 2023, izvirni znanstveni članek Ključne besede: energy, kinetics, molecules, protein structure, rotational dynamics, molecules, protein structure, rotational dynamics Objavljeno v DiRROS: 06.09.2023; Ogledov: 158; Prenosov: 89
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2. Analysis of putative apoplastic effectors from the nematode, Globodera rostochiensis, and identification of an expansin-like protein that can induce and suppress host defensesBarbara Gerič Stare, Shawkat Ali, Maxime Magne, Shiyan Chen, Olivier Côte, Natasa Obradovic, Lubna Jamshaid, Xiaohong Wang, Guy Bélair, Peter Moffett, 2015, izvirni znanstveni članek Ključne besede: nematode, expansin-like protein, expansin, potato cyst nematode, potato pest, parasitic nematodes, plant celular function Objavljeno v DiRROS: 06.09.2022; Ogledov: 350; Prenosov: 139
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3. Fractional heat shock protein 27 urine excretion as a short-term predictor in acute exacerbation of chronic obstructive pulmonary diseaseDenise Traxler, Matthias Zimmermann, Elisabeth Simader, Elisa Einwallner, Dragan Copic, Alexandra Graf, Thomas Mueller, Cecilia Veraar, Mitja Lainščak, Robert Marčun, Mitja Košnik, Matjaž Fležar, Aleš Rozman, Peter Korošec, 2020, izvirni znanstveni članek Povzetek: Background: Chronic obstructive pulmonary disease (COPD) is a major cause of morbidity and mortality and is characterized by episodes of acute exacerbations. Finding a systemic biomarker that reliably predicts outcome after an acute exacerbation remains a major challenge. Heat shock protein 27 (HSP27) has been previously studied in COPD, however, urine excretion trajectory and prognostic value after an exacerbation is unknown. Methods: In this retrospective post hoc analysis of a prospective study that included 253 COPD patients who were hospitalized for acute exacerbation, 207 patients were analyzed. Urine and serum were sampled at admission, discharge, and 180 days after discharge; urine excretion trajectory was analyzed and correlated with clinicopathological and survival data. Results: HSP27 urine excretion increased after an exacerbation episode [1.8% admission, 1.8% discharge, 2.3% 180 days after discharge (P=0.091)]. In severely ill patients (GOLD IV) this course was even more distinct [1.6% admission, 2.1% discharge, 2.8% 180 days after discharge (P=0.007)]. Furthermore, fractional HSP27 urine excretion at discharge was increased in GOLD IV patients (P=0.031). In Kaplan-Meier and univariable Cox proportional hazard models patients with HSP27 urine excretion below 0.845% showed significantly worse survival at 30, 90 and 180 days after discharge. In a multivariable Cox proportional hazard model including established COPD outcome parameters fractional HSP27 urine excretion remained a significant predictor of survival at 30 and 90 days after discharge. Comparing this model to our already published model that includes HSP27 serum concentration we could show that fractional HSP27 urine excretion performs better in short-term survival. Conclusions: Our findings provide novel information about fractional HSP27 urine excretion trajectory in acute exacerbation of COPD. Fractional HSP27 urine excretion may be significantly reduced during an episode of acute exacerbation in COPD patients and may be used as a predictor of short-term all-cause mortality. Ključne besede: biomarkers, heat-shock proteins, chronic obstructive pulmonary disease, urine, heat shock protein 27 Objavljeno v DiRROS: 25.01.2021; Ogledov: 1278; Prenosov: 925
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4. Design of protein logic gate system operating on lipid membranesNeža Omersa, Saša Rezelj, Matic Kisovec, Marjetka Podobnik, Gregor Anderluh, 2020, izvirni znanstveni članek Ključne besede: pore-forming toxin, listeriolysin O, protein logic gates, lipid membrane, DARPin, pH Objavljeno v DiRROS: 25.11.2020; Ogledov: 1316; Prenosov: 772
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5. In-line detection of monoclonal antibodies in the effluent of protein A chromatography with QCM sensorMatic Kisovec, Gregor Anderluh, Marjetka Podobnik, Simon Caserman, 2020, izvirni znanstveni članek Ključne besede: quartz crystal microbalance, mAb, in-line sensor, protein A, continuous multi-column affinity chromatography Objavljeno v DiRROS: 01.09.2020; Ogledov: 1345; Prenosov: 972
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6. Cryo-EM structure of the archaeal 50S ribosomal subunit in complex with initiation factor 6 and implications for ribosome evolutionBasil J. Greber, Daniel Boehringer, Vlatka Godinić Mikulčić, Ana Crnković, Michael Ibba, Ivana Weygand-Durašević, Nenad Ban, 2012, izvirni znanstveni članek Ključne besede: archaeal proteins, cryoelectron microscopy, Methanobacteriaceae, prokaryotic initiation, factors, protein biosynthesis, ribosome subunits, archaeal, ribosomes Objavljeno v DiRROS: 07.05.2020; Ogledov: 1565; Prenosov: 1019
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7. RNA-dependent cysteine biosynthesis in bacteria and archaeaTakahito Mukai, Ana Crnković, Takuya Umehara, Natalia N. Ivanova, Nikos C. Kyrpides, Dieter Söll, 2017, izvirni znanstveni članek Ključne besede: amino acyl-tRNA synthetases, archaea, archaeal proteins, bacteria, computational biology, crystallography, X-ray, genetic code, genome, archaeal, genome, bacterial, phosphoserine, protein binding, protein biosynthesis, RNA, archaeal, RNA, bacterial, RNA, transfer, amino acyl, RNA, transfer, cys, sulfur/metabolism, biochemistry, bioinformatics, cysteine biosynthesis, genetic code, translation Objavljeno v DiRROS: 07.05.2020; Ogledov: 1518; Prenosov: 1218
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8. Five nuclear protein-coding markers for establishing a robust phylogenetic framework of niphargid crustaceans (Niphargidae: Amphipoda) and new molecular sequence dataAjda Moškrič, Rudi Verovnik, 2019, izvirni znanstveni članek Ključne besede: phylogenetic analyses, nucleotide sequences, protein-coding, PCR, molecular evolution, nuclear protein-coding loci, opsin, arginine kinase, phosphoenolpyruvate carboxykinase, glyceraldehyde phosphate dehydrogenase Objavljeno v DiRROS: 16.04.2020; Ogledov: 1663; Prenosov: 439
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