1. Exploring marine microbial diversity : an overview of representative sampling strategiesZrinka Ljubešić, Marija Gligora Udovič, Donata Overlingė, Filip Grgurević, Füsun Akgül, Ariola Bacu, Ana R. Díaz Marrero, Dragana Drakulović, Stefano Fazi, Susana P. Gaudêncio, Anamarija Kolda, Lucie Novoveská, Ivo Safarik, Joana Sousa, Olivier Thomas, Maggie M. Reddy, Giovanna Cristina Varese, Marlen Ines Vasquez, Tihomir Makovec, Ana Rotter, 2025, pregledni znanstveni članek Ključne besede: biodiscovery, marine microbial diversity, sampling protocol, sample preservation and storage, biorepositories, cultures, marine biology Objavljeno v DiRROS: 17.10.2025; Ogledov: 466; Prenosov: 203
Celotno besedilo (5,35 MB) Gradivo ima več datotek! Več... |
2. Recruitment and controlled growth of juveniles of the critically endangered fan mussel Pinna nobilis in the Northern AdriaticValentina Pitacco, Domen Trkov, Daniela Caracciolo, Saul Ciriaco, Marco Segarich, Edoardo Batistini, Martina Orlando-Bonaca, Lovrenc Lipej, Borut Mavrič, Manja Rogelja, Ilenia Azzena, Chiara Locci, Fabio Scarpa, Daria Sanna, Marco Casu, Chiara Manfrin, Alberto Pallavicini, Ana Fortič, 2025, izvirni znanstveni članek Povzetek: The fan mussel Pinna nobilis is the largest bivalve species in the Mediterranean Sea and provides numerous ecosystem services. It is classified as critically endangered by IUCN (International Union for Conservation of Nature) due to severe mass mortality events throughout the Mediterranean. The aims of this work are as follows: (i) to assess the current recruitment potential of the species, (ii) to enhance recruitment by keeping juveniles in controlled conditions before releasing them back into the sea, and (iii) to assess the health status of recruits. In the period 2022–2023, larval collectors were set up in the Gulf of Trieste as part of the LIFE Pinna project. The collected individuals were kept in aquaria in two different facilities under different conditions: (a) a closed system with constant water temperature, live phytoplankton, and commercial food and (b) an open system with ambient seawater temperature and commercial food. A clear temporal and spatial variability in recruitment was observed: 13 recruits were found in 2022 and 50 recruits in 2023. The live specimens were between 0.5 and 8 cm in size upon collection and larger in 2023. The growth and survival rate did not differ significantly between the two systems, but the average monthly growth and survival rate were related to the initial size of the juveniles. Ključne besede: pen shell, ex situ maintenance, in situ maintenance, Haplosporidium pinnae, Mycobacterium, conservation, marine biology Objavljeno v DiRROS: 08.10.2025; Ogledov: 405; Prenosov: 188
Celotno besedilo (1,71 MB) Gradivo ima več datotek! Več... |
3. ≠An ≠insight into the diet of the bull ray, Aetomylaeus bovinus (Geoffroy Saint-Hilaire, 1817) in the Northern Adriatic SeaLovrenc Lipej, Riccardo Battistella, Borut Mavrič, Danijel Ivajnšič, 2025, izvirni znanstveni članek Povzetek: This study provides baseline information on the feeding habits of the bull ray, Aetomylaeus bovinus (Geoffroy Saint-Hilaire, 1817), in the Gulf of Venezia. Among 1557 prey items isolated from the stomachs of bull ray specimens, gastropods represented the overwhelming majority (93.8%). Within gastropods, Aporrhais pespelecani was the dominant species, followed by Gibbula magus and Bolinus brandaris – all characteristic elements of the biocoenosis of the muddy detritic bottom. We observed differences in prey structure between juveniles and adults, as well as sexes. Among fishes that proved to be particularly important in terms of biomass, the majority of prey items consisted of small pelagic fish, including pilchard (Sardina pilchardus) and horse mackerel (Trachurus sp.). This paper contributes new data on the feeding ecology of a lesser known and critically endangered batoid species. Ključne besede: myliobatids, feeding ecology, nursery, Gulf of Venice, batoids, endangered species, marine biology Objavljeno v DiRROS: 03.07.2025; Ogledov: 663; Prenosov: 319
Celotno besedilo (1,82 MB) Gradivo ima več datotek! Več... |
4. Seagrasses : ≠a ≠promising source of bioactive compounds for human health applicationsMartina Orlando-Bonaca, Artur Bonaca, Ana Rotter, 2025, izvirni znanstveni članek Povzetek: Seagrasses are unique marine flowering plants that provide critical ecological services and can serve as valuable reservoirs of bioactive compounds with potential health benefits. This review explores the bioactive metabolites found in four seagrass species native to European marine waters: Cymodocea nodosa, Posidonia oceanica, Zostera marina, and Nanozostera noltei. These species exhibit diverse chemical properties, including antioxidants, antimicrobials, and anti-inflammatory agents, making them promising candidates for pharmaceutical, nutraceutical, and cosmetic applications. Despite their promising applications in biotechnology, their full potential remains underexplored due to research and technological limitations. Future studies should focus on optimizing extraction methods, exploring synergistic interactions, and ensuring sustainable utilization of these valuable marine resources. Ključne besede: seagrasses, European marine waters, bioactive compounds, human health applications, pharmaceutics, nutriceutics, cosmetics, marine biology Objavljeno v DiRROS: 03.07.2025; Ogledov: 710; Prenosov: 302
Celotno besedilo (1,70 MB) Gradivo ima več datotek! Več... |
5. Current knowledge on the distribution of the poorly known echiurid species Maxmuelleria gigas (M. Müller, 1852) in the Slovenian SeaNeža Leban, Valentina Pitacco, 2025, izvirni znanstveni članek Povzetek: In September 2024, a specimen of Maxmuelleria gigas (M. Müller, 1852) was found during a monitoring campaign in the Bay of Koper. This record is the second one of this less known macrobenthic species in the Slovenian Sea and one among few up to date reported in the Adriatic Sea, as well. Sediment mounds observed with an underwater video sledge on muddy bottom in the southern part of the Gulf of Trieste have been related to this species. The species distribution and density (47 per 100 m2) were estimated based on the quantification of the observed sediment mounds. The potential underestimation of the density and distribution of this species in the Gulf of Trieste in the past studies is discussed in relation to sampling method. Ključne besede: Echiura, sediment mounds, videotransects, Northern Adriatic, marine biology Objavljeno v DiRROS: 02.07.2025; Ogledov: 566; Prenosov: 290
Celotno besedilo (2,07 MB) Gradivo ima več datotek! Več... |
6. Diversity of the surface microbiome of canopy-forming brown macroalgae (Fucales) in the northern AdriaticNeža Orel, Ana Lokovšek, Martina Orlando-Bonaca, Tinkara Tinta, 2025, izvirni znanstveni članek Povzetek: Canopy-forming brown macroalgae (Fucales) offer numerous key ecosystem services in Mediterranean coastal areas. However, anthropogenic pressures and climate change have significantly impacted their habitats, leading to an extensive population decline. Interactions between algae and microbiota are a major ecological aspect, yet they represent a significant knowledge gap. In our baseline study, we describe the diversity and host specificity of the microbiome of two genetically identical but morphologically distinct populations of Gongolaria barbata from anthropogenically impacted northern Adriatic Sea. Our preliminary results showed that the microbiomes of G. barbata exhibited low host specificity, with 75% of the algae-associated amplicon sequence variants (ASVs) being part of the core coastal ecosystem microbiome. However, microbiomes of specific algal parts, ambient seawater, and sediment differed significantly in terms of alpha diversity and composition. In contrast, the holdfast and axis show higher similarity with sediment microbiomes, indicating potential horizontal transmission pathways. Microbiomes associated with deciduous parts of morphologically distinct G. barbata populations showed no difference in alpha diversity and composition. In contrast, higher variation in alpha diversity and lower sequence proportion of shared ASVs were observed in the holdfast and axis of the two distinct populations. Our observational study provides valuable new insights and baseline for future hypothesis-driven research on the interactions between algae and associated microbiota—a knowledge gap that needs to be addressed in the future for better understanding of the ecological and evolutionary dynamics of coastal ecosystems. Ključne besede: ecosystem services, anthropogenic pressures, microbiome, host specificity, alpha diversity, marine biology, ecology Objavljeno v DiRROS: 18.04.2025; Ogledov: 707; Prenosov: 597
Celotno besedilo (1,35 MB) Gradivo ima več datotek! Več... |
7. Relationships between the deep chlorophyll maximum and hydrographic characteristics across the Atlantic, Indian and Pacific oceansMarta Estrada, Mikel Latasa, Ana Maria Cabello, Patricia de la Fuente, Carles Guallar, Patricija Mozetič, 2024, izvirni znanstveni članek Povzetek: The Malaspina-2010 circumnavigation expedition on board R/V Hesperides surveyed tropical and subtropical regions of the Atlantic, Indian and Pacific oceans between December 2010 and July 2011. This article examines the relationships between the distribution of chlorophyll a (Chl a), major inorganic nutrients and other hydrographic variables. A deep chlorophyll maximum (DCM) was found at most stations between 60 and 150 m depth; it occurred close to the level of 1% surface photosynthetically active radiation and was associated with the nitracline. There was a negative relationship between total Chl a at surface and the DCM depth, and between Chl a concentration at the DCM and DCM depth. In terms of Chl a concentration, picophytoplankton was the dominant size class at all sampled light intensities (surface, 20% of surface PAR and PAR at DCM), oceans and geoclimatic zones, except at some stations influenced by upwellings or divergences. Within the Chl a concentration ranges found in this study, the proportion of picophytoplankton increased with total Chl a, in contrast with some previous findings. Vertically integrated Chl a was positively correlated with surface Chl a, with similar slopes for the whole data set and for the different oceans and zones. In turn, surface Chl a and sea surface temperature showed a negative correlation for the Indian Ocean and the subtropical zone, a positive correlation for the Atlantic, and non-significant relationships for the remaining oceans and zones. Ključne besede: Malaspina 2010, chlorophyll a, nitracline, deep chlorophyll maximum, phytoplankton size fractionation, Atlantic Ocean, Pacific Ocean, Indian Ocean, hydrobiology, marine biology Objavljeno v DiRROS: 04.04.2025; Ogledov: 862; Prenosov: 546
Celotno besedilo (4,04 MB) Gradivo ima več datotek! Več... |
8. Discovery of novel and known viruses associated with toxigenic and non-toxigenic bloom forming diatoms from the Northern Adriatic SeaTimotej Turk Dermastia, Denis Kutnjak, Ion Gutiérrez-Aguirre, Corina P. D. Brussaard, Katarina Bačnik, 2024, izvirni znanstveni članek Povzetek: Algal blooms impact trophic interactions, community structure and element fluxes. Despite playing an important role in the demise of phytoplankton blooms, only few viruses infecting diatoms have been cultured. Pseudo-nitzschia is a widespread diatom genus that commonly blooms in coastal waters and contains toxin-producing species. This study describes the characterization of a novel virus infecting the toxigenic species Pseudo-nitzschia galaxiae isolated from the northern Adriatic Sea. The ssRNA virus PnGalRNAV has 29.5 nm ± 1.2 nm icosahedral virions and a genome size of 8.8 kb. It belongs to the picorna-like Marnaviridae family and shows high specificity for P. galaxiae infecting two genetically and morphologically distinct strains. We found two genetically distinct types of this virus and screening of the global virome database revealed matching sequences from the Mediterranean region and China, suggesting its global distribution. Another virus of similar shape and size infecting Pseudo-nitzschia calliantha was found, but its genome could not be determined. In addition, we have obtained and characterized a new virus that infects Chaetoceros tenuissimus. The replicase protein of this virus is very similar to the previously described ChTenDNAV type-II virus, but it has a unique genome and infection pattern. Our study is an important contribution to the collective diatom virus culture collection and will allow further investigation into how these viruses control diatom bloom termination, carbon export and toxin release in the case of Pseudo-nitzschia. Ključne besede: algal blooms, diatoms, virus, PnGalRNAV, genome, Adriatic Sea, marine virology, phytoplankton ecology, marine biology Objavljeno v DiRROS: 23.10.2024; Ogledov: 1132; Prenosov: 1328
Celotno besedilo (8,37 MB) Gradivo ima več datotek! Več... |
9. Differences in distribution and characteristics of microplastics in sediments of the south-eastern part of the Gulf of TriesteJena Jamšek, Helena Prosen, Oliver Bajt, 2024, izvirni znanstveni članek Povzetek: Introduction: The Gulf of Trieste is prone to the accumulation of various pollutants and microplastics due to its geomorphological and hydrological characteristics. However, the distribution and sources of microplastics in this semi-enclosed area are poorly studied. The aim of our study was to determine the distribution and chemical composition of MP particles in the sediments of the Gulf of Trieste. Methods: In this study, we collected 24 surface sediment samples using a Van Veen grab. Microplastics were extracted by density separation using NaCl. The size, shape, and color of the extracted microplastics were determined using an optical microscope, and the composition of the polymers was determined by Fourier transform infrared spectroscopy. Results and discussion: The highest concentrations of up to 125 microplastic particles per 100 g dry sediment were found in coastal areas. Concentrations in the open sea were much lower, with an average of 3 particles per 100 g of sediment. Most of the microplastic was fibrous, made of polypropylene, 100–300 µm in size, and blue. This is the first study showing that microplastics are present in the sediments of the south-eastern part of the Gulf of Trieste. The findings suggest that microplastics exhibit a tendency to be retained within the sediment, leading to their accumulation primarily in a narrow coastal area rather than dispersing offshore. Our results will contribute to a better knowledge of the distribution and possible sources of plastics and microplastics in the Gulf of Trieste and even beyond in similar semi-enclosed marine areas. Ključne besede: microplastics, sediments, Gulf of Trieste, density separation, polypropylene, accumulation of pollutants, marine biology Objavljeno v DiRROS: 23.10.2024; Ogledov: 858; Prenosov: 1461
Celotno besedilo (1,77 MB) Gradivo ima več datotek! Več... |
10. Animal life in the shallow subseafloor crust at deep-sea hydrothermal ventsMonika Bright, Sabine Gollner, André Luiz de Oliveira, Salvador Espada-Hinojosa, Avery Fulford, Tihomir Makovec, Tinkara Tinta, 2024, izvirni znanstveni članek Povzetek: It was once believed that only microbes and viruses inhabited the subseafloor crust beneath hydrothermal vents. Yet, on the seafloor, animals like the giant tubeworm Riftia pachyptila thrive. Their larvae are thought to disperse in the water column, despite never being observed there. We hypothesized that these larvae travel through the subseafloor via vent fluids. In our exploration, lifting lobate lava shelves revealed adult tubeworms and other vent animals in subseafloor cavities. The discovery of vent endemic animals below the visible seafloor shows that the seafloor and subseafloor faunal communities are connected. The presence of adult tubeworms suggests larval dispersal through the recharge zone of the hydrothermal circulation system. Given that many of these animals are host to dense bacterial communities that oxidize reduced chemicals and fix carbon, the extension of animal habitats into the subseafloor has implications for local and regional geochemical flux measurements. These findings underscore the need for protecting vents, as the extent of these habitats has yet to be fully ascertained. Ključne besede: subseafloor, hydrothermal vents, tubeworms, larvae, vent fluids, bacterial communities, geochemical flux, geochemistry, marine biology Objavljeno v DiRROS: 22.10.2024; Ogledov: 871; Prenosov: 1416
Celotno besedilo (4,15 MB) Gradivo ima več datotek! Več... |