Continental-wide population genetics and post-Pleistocene range expansion in field maple (Acer campestre L.), a subdominant temperate broadleaved tree speciesEric Wahlsteen
, Evangelia V. Avramidou
, Gregor Božič
, Rida Mohammed Mediouni
, Bernhard Schuldt
, Halina Sobolewska
, 2023, izvirni znanstveni članek
Povzetek: Acer campestre L. is a rarely silviculturally managed and poorly investigated European tree species which forms seminatural populations and can thus be considered as a model tree for studying post glacial colonisation and phylogeography. Herein, we studied the genetic structure of Acer campestre L. in order to investigate population and genetic diversity clines over the distribution range and for synthesizing the results into a post-Pleistocene range expansion hypothesis. We characterised the genetic diversity and population structure of 61 Acer campestre populations using 12 microsatellite markers. The three detected gene pools are structured geographically creating a longitudinal pattern corresponding with their proposed refugial origin. The results indicated a longitudinal population cline with three strong but highly admixed gene pools. Based on the possible signal from the structure results, a number of phylogeographic dispersal hypotheses were tested using approximate Bayesian computation, and this analysis supported the three refugia scenario with a simultaneous divergence prior to the last glacial maximum. Acer campestre shows a typical decrease in population diversity with northern and western distribution and signatures of surfng alleles in the western expansion axis in 2% of the included alleles. Acer campestre exhibits a high degree of admixture among populations and typical signatures of isolation by distance with no naturally delimited subpopulations. The population structure is rather impacted by geographically, than climatologically means with surfng alleles and alleles strongly limited to geographical areas. Our data also suggest that the population structure still today harbours signatures of post glacial migrations from Mediterranean as well as northern glacial refugia.
Ključne besede: allele surfing, Bayesian inference, glacial refugia, nuclear SSR, sliding window
Objavljeno v DiRROS: 07.03.2023; Ogledov: 281; Prenosov: 123
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Pan-European phylogeography of the European roe deer (Capreolus capreolus)Kamila Plis
, Magdalena Niedziałkowska
, Tomasz Borowik
, Johannes Lang
, Mike Heddergott
, Juha Tiainen
, Aleksey Bunevich
, Nikica Šprem
, Ladislav Paule
, Aleksey A. Danilkin
, Marina Kholodova
, Elena Zvychaynaya
, Nadezhda Kashinina
, Boštjan Pokorny
, Katarina Flajšman
, 2022, izvirni znanstveni članek
Povzetek: To provide the most comprehensive picture of species phylogeny and phylogeography of European roe deer (Capreolus capreolus), we analyzed mtDNA control region (610 bp) of 1469 samples of roe deer from Central and Eastern Europe and included into the analyses additional 1541 mtDNA sequences from GenBank from other regions of the continent. We detected two mtDNA lineages of the species: European and Siberian (an introgression of C. pygargus mtDNA into C. capreolus). The Siberian lineage was most frequent in the eastern part of the continent and declined toward Central Europe. The European lineage contained three clades (Central, Eastern, and Western) composed of several haplogroups, many of which were separated in space. The Western clade appeared to have a discontinuous range from Portugal to Russia. Most of the haplogroups in the Central and the Eastern clades were under expansion during the Weichselian glacial period before the Last Glacial Maximum (LGM), while the expansion time of the Western clade overlapped with the Eemian interglacial. The high genetic diversity of extant roe deer is the result of their survival during the LGM probably in a large, contiguous range spanning from the Iberian Peninsula to the Caucasus Mts and in two northern refugia.
Ključne besede: Capreolus capreolus, expansion, mitochondrial DNA, the Last Glacial Maximum refugia, the Quaternary history, Phylogenetics
Objavljeno v DiRROS: 26.05.2022; Ogledov: 495; Prenosov: 349
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