1. Survival of Eurasian lynx in the human-dominated landscape of EuropeJoseph Premier, M. L. Bastianelli, Julian Oeser, Ole Anders, Henrik Andrén, Malin Aronsson, Guna Bagrade, Elisa Belotti, Christine Breitenmoser-Würsten, Luděk Bufka, Rok Černe, Lan Hočevar, Miha Krofel, Nives Pagon, 2025, izvirni znanstveni članek Povzetek: Survival and cause-specific mortality rates are vital for evidence-based population forecasting and conservation, particularly for large carnivores, whose populations are often vulnerable to human-caused mortalities. It is therefore important to know the relationship between anthropogenic and natural mortality causes to evaluate whether they are additive or compensatory. Further, the relation between survival and environmental covariates could reveal whether specific landscape characteristics influence demographic performance. We used telemetry data on 681 Eurasian lynx (Lynx lynx), a model apex predator with large spatial requirements, that were tracked across their European distribution. Through time-to-event analyses, we sought to determine the variables associated with differences in their survival. Illegal killing was the main cause of mortality (33.8%), and mortality rates were similar in protected and hunted populations (8.6% and 7.0% per year, respectively). Survival varied greatly across populations (70–95% per year). Across all study sites, higher hunting and anthropogenic mortality rates were partially compensated by lower rates of other mortality causes but not by natural mortality alone. Variation in survival depended on sex (female survival was 1.5 times greater than male survival) and seasonality (highest risk during hunting season and winter), and lower survival rates were correlated with higher human modification of landscapes at both coarse (home range composition) and fine (habitat use within home range) scales. Some variation in survival was driven by unobserved factors, which, given the high rates of human-caused mortalities, including illegal killing, are of foremost concern. Due to the low natural mortality rates in protected and hunted populations, we conclude that anthropogenic causes of mortality are likely close to additive, such that maintaining or increasing refuge habitat with little human disturbance is critical to lynx conservation. Ključne besede: cause-specific mortality, compensatory mortality, Eurasian lynx, large carnivore, Lynx lynx, survival Objavljeno v DiRROS: 23.04.2025; Ogledov: 288; Prenosov: 112
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2. A preliminary life history traits analysis of sharks in the Sea of Marmara (Türkiye), where deoxygenation and habitat deterioration are raising concernsHakan Kabasakal, Serdar Sakinan, Lovrenc Lipej, Danijel Ivajnšič, 2023, izvirni znanstveni članek Povzetek: Life history traits of 17 species of sharks occurring in the Sea of Marmara were analysed based on Gower’s distances, Principal Coordinate Analyses, and hierarchical clustering. The analysis shows that the sharks of the Sea of Marmara can ecologically be divided into several clusters. The increasing occurrence of sharks on the Marmara continental shelf, especially in the last few years, suggests that the expected habitat compression due to deoxygenation has begun to take place. This situation, which can be considered as a “habitat trap” for sharks, should be considered as a threat that may lead to shark mortalities due to the intensification of bycatches or even the intentional killing of sharks. Available results are sufficient to predict a disturbing future for sharks of the Sea of Marmara if the factors (deoxygenation, habitat loss, bycatch, etc.) threatening the overall ecosystem do not improve. Ključne besede: PCoA, ecology, sharks, habitat compression, mortality Objavljeno v DiRROS: 12.03.2025; Ogledov: 262; Prenosov: 133
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3. The potential threats posed by the invasive bark beetle Polygraphus proximus (Coleoptera, Curculionidae: Scolytinae) to a natural park in the Middle Urals (Russia)V. I. Ponomarev, Olga V. Tolkach, G. I. Klobukov, Anton A. Efremenko, N. V. Pashenova, D.A. Demidko, Natalia I. Kirichenko, Yuri N. Baranchikov, 2024, izvirni znanstveni članek Povzetek: The four-eyed fir bark beetle Polygraphus proximus Blandford, 1894 (Coleoptera, Curculionidae: Scolytinae) is an invasive species that originates from the Far East. Since early 2000s, it became known as an aggressive pest causing massive dieback of Siberian fir (Abies sibirica Ledeb.) in Siberia and, to some extent, in the European part of Russia. Here, we report the first record of P. proximus in Sverdlovsk Region (the Middle Urals, Russia). In summer 2023, A. sibirica trees colonized by the pest were discovered on the territory of the “Olenyi Ruchyi” Natural Park. The dendrochronological analysis of the cores of fir trees killed by the beetle indicated that the majority (72%) of these trees died in 2021–2022, while the earliest tree death occured already in 2007 and 2009, meaning that the pest was present in the Natural Park for at least two decades. Mycological analysis of bark and wood samples of infested trees revealed the fungus colonies assigned to Grosmannia aoshimae (Ohtaka, Masuya & Yamaoka) Masuya & Yamaoka. Associated with P. proximus, this Far Eastern fungus species has spread with the beetle to Siberia and the Urals, contributing to tree mortality. Siberian fir is present on 69% of the forested area in the “Olenyi Ruchyi”. The colonization of fir trees by P. proximus recorded in the park in 2023 alarms about the high risk of the pest outbreak in the coming years, which may lead to subsequent tree death over a huge territory of the park affecting its ecological, cultural, and recreational values. To prevent the dramatic impact, it is highly urgent to take all the necessary measures to suppress the distribution and combat this alien pest. Ključne besede: Xylophagous species, alien pest, fir forest stands, tree mortality, Grosmannia aoshimae Objavljeno v DiRROS: 20.02.2025; Ogledov: 263; Prenosov: 161
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4. The abdominal adiposity index (a body shape index) predicts 10-year all-cause mortality in elderly active non-obese subjectsAlessio Nunnari, Filippo Giorgio Di Girolamo, Kaja Teraž, Nicola Fiotti, Boštjan Šimunič, Filippo Mearelli, Rado Pišot, Gianni Biolo, 2024, izvirni znanstveni članek Povzetek: Background/Objectives: A Body Shape Index (ABSI), which accounts for waist circumference relative to mass and height, shows a robust association with mortality risk. The present study evaluates the effectiveness of ABSI as a predictor of 10-year all-cause mortality in physically active, non-obese elderly individuals. Methods: This prospective cohort study included 159 volunteers (94 women, aged 60–80 years), recruited in the frame of the “Physical Activity and Nutrition for Great Ageing” (PANGeA) Cross-border Cooperation Program Slovenia–Italy 2007–2013, and followed for 10 years. Baseline characteristics included anthropometric measurements, bioelectrical impedance analysis, and cardiovascular fitness tests (VO2max). Statistical analyses (Cox regression, Kaplan–Meier survival) were conducted to examine the relationship between ABSI and mortality. Results: During the 10-year follow-up, 10 deaths (6.7%) were recorded. ABSI (adjusted for age, smoking, comorbidities, and therapy) was an independent predictor of mortality (hazard ratio = 4.65, p < 0.001). Higher ABSI scores were linked to reduced VO2max (r = −0.190, p = 0.017) and increased systolic blood pressure (r = 0.262, p = 0.001). An ABSI-based predictive model showed strong discriminatory power (AUROC = 0.91). Conclusions: ABSI is a reliable predictor of 10-year mortality in active, non-obese elderly individuals and may improve risk stratification in clinical practice. Ključne besede: ABSI, a body shape index, body shape, fre fat mass, sarcopenia, prognostic index, elderly, mortality Objavljeno v DiRROS: 16.10.2024; Ogledov: 681; Prenosov: 467
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5. Tracking a mass mortality outbreak of pen shell Pinna nobilis populations : a collaborative effort of scientists and citizensMiguel Cabanellas-Reboredo, Maite Vázquez-Luis, Baptiste Mourre, Elvira Álvarez, Salud Deudero, Ángel Amores, Piero Addis, Enric Ballesteros, Agustín Barrajón, Stefania Coppa, Borut Mavrič, 2019, izvirni znanstveni članek Povzetek: A mass mortality event is devastating the populations of the endemic bivalve Pinna nobilis in the Mediterranean Sea from early autumn 2016. A newly described Haplosporidian endoparasite (Haplosporidium pinnae) is the most probable cause of this ecological catastrophe placing one of the largest bivalves of the world on the brink of extinction. As a pivotal step towards Pinna nobilis conservation, this contribution combines scientists and citizens’ data to address the fast- and vast-dispersion and prevalence outbreaks of the pathogen. Therefore, the potential role of currents on parasite expansion was addressed by means of drift simulations of virtual particles in a high-resolution regional currents model. A generalized additive model was implemented to test if environmental factors could modulate the infection of Pinna nobilis populations. The results strongly suggest that the parasite has probably dispersed regionally by surface currents, and that the disease expression seems to be closely related to temperatures above 13.5 °C and to a salinity range between 36.5–39.7 psu. The most likely spread of the disease along the Mediterranean basin associated with scattered survival spots and very few survivors (potentially resistant individuals), point to a challenging scenario for conservation of the emblematic Pinna nobilis, which will require fast and strategic management measures and should make use of the essential role citizen science projects can play. Ključne besede: mass mortality, endoparasites Objavljeno v DiRROS: 24.07.2024; Ogledov: 489; Prenosov: 344
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6. Habitat degradation facilitates the invasion of Neophytes : a resurvey study based on permanent vegetation plots in oak forests in Slovenia (Europe)Janez Kermavnar, Lado Kutnar, 2024, izvirni znanstveni članek Povzetek: The spread of neophytes (non-native plant species) challenges the conservation status and ecological integrity of forests, especially in lowland areas. Long-term resurvey studies are needed to evaluate the temporal dynamics of neophytes in forests; however, such data are scarce. In 2023, we resampled a set of 45 permanent vegetation plots (established in 1992/93) in two forest vegetation types: oak–hornbeam forests dominated by Quercus robur and colline oak–beech forests dominated by Q. petraea. Over the last 30 years, oak forests have experienced extensive oak tree mortality, with the degree of habitat degradation being greater in Q. robur forests. In the early 1990s, only three neophytes with low abundance were recorded across all plots. In the 2023 resurvey, the total number of neophytes increased to 22 species (15 herbaceous and 7 woody species), comprising 6.9% of the total species pool in the understory layer. The increase in the plot-level number and cover of neophytes was significant in plots dominated by Q. robur but not in those with Q. petraea. The most frequent neophytes were Impatiens parviflora (present in 31% of plots), Solidago gigantea (27%), Erigeron annuus (16%) and Erechtites hieraciifolia (16%). The richness and cover of neophytes were significantly affected by the tree layer cover (negative correlation) and the degree of soil disturbance (positive correlation). All neophytes established in disturbed patches, whereas the occurrence of I. parviflora was exceptional as it was able to colonize less degraded, shaded understory environments. Habitat degradation (the mortality-induced loss of stand-forming oak trees resulting in extensive tree layer cover decrease) emerged as a key driver promoting neophyte proliferation, coupled with the impact of management-induced disturbances affecting overstory and soil conditions. The spread is expected to continue or even intensify in the future because novel light regimes and disturbances make forest habitats less resistant to neophyte proliferation. Ključne besede: long-term vegetation change, invasive non-native plants, oak mortality, Quercus robur, Quercus petraea, canopy openness, Impatiens parviflora, Slovenia Objavljeno v DiRROS: 19.04.2024; Ogledov: 725; Prenosov: 583
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7. Early-warning signals of individual tree mortality based on annual radial growthMaxime Cailleret, Vasilis Dakos, Steven Jansen, Elisabeth M.R. Robert, Tuomas Aakala, Mariano M. Amoroso, Joe A. Antos, Christof Bigler, Harald Bugmann, Marco Caccianaga, Katarina Čufar, Tom Levanič, 2019, izvirni znanstveni članek Povzetek: Tree mortality is a key driver of forest dynamics and its occurrence is projected to increase in the future due to climate change. Despite recent advances in our understanding of the physiological mechanisms leading to death, we still lack robust indicators of mortality risk that could be applied at the individual tree scale. Here, we build on a previous contribution exploring the differences in growth level between trees that died and survived a given mortality event to assess whether changes in temporal autocorrelation, variance, and synchrony in time-series of annual radial growth data can be used as early warning signals of mortality risk. Taking advantage of a unique global ring-width database of 3065 dead trees and 4389 living trees growing together at 198 sites (belonging to 36 gymnosperm and angiosperm species), we analyzed temporal changes in autocorrelation, variance, and synchrony before tree death (diachronic analysis), and also compared these metrics between trees that died and trees that survived a given mortality event (synchronic analysis). Changes in autocorrelation were a poor indicator of mortality risk. However, we found a gradual increase in interannual growth variability and a decrease in growth synchrony in the last %20 years before mortality of gymnosperms, irrespective of the cause of mortality. These changes could be associated with drought-induced alterations in carbon economy and allocation patterns. In angiosperms, we did not find any consistent changes in any metric. Such lack of any signal might be explained by the relatively high capacity of angiosperms to recover after a stress-induced growth decline. Our analysis provides a robust method for estimating early-warning signals of tree mortality based on annual growth data. In addition to the frequently reported decrease in growth rates, an increase in inter-annual growth variability and a decrease in growth synchrony may be powerful predictors of gymnosperm mortality risk, but not necessarily so for angiosperms. Ključne besede: tree mortality, ring-width, forest, growth, resilience indicators, drought, biotic agents, variance Objavljeno v DiRROS: 20.07.2022; Ogledov: 1307; Prenosov: 849
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8. Mortality, seasonal variation, and susceptibility to acute exacerbation of COPD in the pandemic year : a nationwide population studyIrena Šarc, Aleša Lotrič Dolinar, Tina Morgan, Jože Sambt, Kristina Ziherl, Dalibor Gavrić, Julij Šelb, Aleš Rozman, Petra Došenović Bonča, 2022, izvirni znanstveni članek Povzetek: Background: Previous studies have suggested that the coronavirus disease 2019 (COVID-19) pandemic was associated with a decreased rate of acute exacerbation of chronic obstructive pulmonary disease (AECOPD). Data on how the COVID-19 pandemic has influenced mortality, seasonality of, and susceptibility to AECOPD in the chronic obstructive pulmonary disease (COPD) population is scarce. Methods: We conducted a national population-based retrospective study using data from the Health Insurance Institute of Slovenia from 2015 to February 2021, with 2015–2019 as the reference. We extracted patient and healthcare data for AECOPD, dividing AECOPD into severe, resulting in hospitalisation, and moderate, requiring outpatient care. The national COPD population was generated based on dispensed prescriptions of inhalation therapies, and moderate AECOPD events were analysed based on dispensed AECOPD medications. We extracted data on all-cause and non-COVID mortality. Results: The numbers of severe and moderate AECOPD were reduced by 48% and 34%, respectively, in 2020. In the pandemic year, the seasonality of AECOPD was reversed, with a 1.5-fold higher number of severe AECOPD in summer compared to winter. The proportion of frequent exacerbators (2 AECOPD hospitalisations per year) was reduced by 9% in 2020, with a 30% reduction in repeated severe AECOPD in frequent exacerbators and a 34% reduction in persistent frequent exacerbators (2 AECOPD hospitalisations per year for 2 consecutive years) from 2019. The risk of two or more moderate AECOPD decreased by 43% in 2020. In the multivariate model, pandemic year follow-up was the only independent factor associated with a decreased risk for severe AECOPD (hazard ratio [HR]: 0.71; 95% confidence interval [CI]: 0.61–0.84; p < 0.0001). In 2020, non-COVID mortality decreased (−15%) and no excessive mortality was observed in the COPD population. Conclusion: In the pandemic year, we found decreased susceptibility to AECOPD across severity spectrum of COPD, reversed seasonal distribution of severe AECOPD and decreased non-COVID mortality in the COPD population. Ključne besede: chronic obstructive pulmonary disease -- mortality, pandemics, seasons, exacerbation, acute exacerbation, seasonal variations, population study Objavljeno v DiRROS: 14.03.2022; Ogledov: 1291; Prenosov: 712
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9. Reconstruction of brown bear population dynamics in Slovenia in the period 1998-2019 : ǂa ǂnew approach combining genetics and long-term mortality dataKlemen Jerina, Andrés Ordiz, 2021, izvirni znanstveni članek Povzetek: Reliable data and methods for assessing changes in wildlife population size over time are necessary for management and conservation. For most species, assessing abundance is an expensive and labor-intensive task that is not affordable on a frequent basis. We present a novel approach to reconstructing brown bear population dynamics in Slovenia in the period 1998-2019, based on the combination of two CMR non-invasive genetic estimates (in 2007 and 2015) and long-term mortality records, to show how the latter can help the study of population dynamics in combination with point-in-time estimates. The spring (i.e. including newborn cubs) population size estimate was 383 (CI: 336-432) bears in 1998 and 971 (CI: 825-1161) bears in 2019. In this period, the average annual population growth rate was 4.5 %. The predicted population size differed by just 7 % from the non-invasive genetic size estimate after eight years, suggesting that the method is reliable. It can predict the evolution of the population size under different management scenarios and provide information on key parameters, e.g. background mortality and the sex- and age-structure of the population. Our approach can be used for several other wildlife species, but it requires reliable mortality data over time. Ključne besede: genetic estimates of population size, mortality records, population monitoring, population size, predictive modelling, brown bear Objavljeno v DiRROS: 28.03.2021; Ogledov: 5080; Prenosov: 2849
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10. Comparison of European ICU patients in 2012 (ICON) versus 2002 (SOAP)Jean Louis Vincent, Jean-Yves Lefrant, Katarzyna Kotfis, Rahul Nanchal, Ignacio Martin-Loeches, Samir G. Sakka, Xavier Wittebole, Peter Pickkers, Rui P. Moreno, Yasser Sakr, 2018, izvirni znanstveni članek Povzetek: Purpose: To evaluate differences in the characteristics and outcomes of intensive care unit (ICU) patients over time. Methods: We reviewed all epidemiological data, including comorbidities, types and severity of organ failure, interventions, lengths of stay and outcome, for patients from the Sepsis Occurrence in Acutely ill Patients (SOAP) study, an observational study conducted in European intensive care units in 2002, and the Intensive Care Over Nations (ICON) audit, a survey of intensive care unit patients conducted in 2012. Results: We compared the 3147 patients from the SOAP study with the 4852 patients from the ICON audit admitted to intensive care units in the same countries as those in the SOAP study. The ICON patients were older (62.5 +/- 17.0 vs. 60.6 +/- 17.4 years) and had higher severity scores than the SOAP patients. The proportion of patients with sepsis at any time during the intensive care unit stay was slightly higher in the ICON study (31.9 vs. 29.6%, p = 0.03). In multilevel analysis, the adjusted odds of ICU mortality were significantly lower for ICON patients than for SOAP patients, particularly in patients with sepsis [OR 0.45 (0.35-0.59), p < 0.001]. Conclusions: Over the 10-year period between 2002 and 2012, the proportion of patients with sepsis admitted to European ICUs remained relatively stable, but the severity of disease increased. In multilevel analysis, the odds of ICU mortality were lower in our 2012 cohort compared to our 2002 cohort, particularly in patients with sepsis. Ključne besede: intensive care units -- analysis -- epidemiology -- mortality, sepsis, severity of disease Objavljeno v DiRROS: 30.11.2020; Ogledov: 2345; Prenosov: 1633
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