1. Soil-origin effects on wild lupin seed traits and their potential for crop developmentOren Shelef, Dvora Namdar, Hanita Zemach, Paula Pongrac, Mitja Kelemen, Ofer Cohen, 2026, izvirni znanstveni članek Povzetek: This paper explores the effect of soil type at the site of origin on lupin seed phytochemistry. We examined wild populations of lupins originating from basaltic and calcareous soils and analyzed their seed morphology and phytochemical profiles, with a particular focus on secondary metabolites—namely quinolizidine alkaloids and ionomes. The two lupin species studied, Lupinus pilosus and L. palaestinus, are native to Israel and were collected from wild populations. The overarching goal of this study is to leverage this knowledge to facilitate the domestication of these crop wild relatives for food or feed applications. We sampled 30 populations of the two species across Israel, characterized their environments at the landscape scale, and integrated this data with quinolizidine alkaloid profiles obtained from the seeds. This approach enabled us to elucidate the biochemical and ecological contexts underlying alkaloid formation. This study reveals that L. pilosus and L. palaestinus can be distinguished based on their seed phytochemical profiles. We suggest that these distinguished profiles are related to their soil origin. Our results highlight the influence of pedological origin—basaltic vs calcareous soils on both quinolizidine alkaloid composition and ionomic profiles in wild lupins. These insights may ultimately support the development of novel crops, contribute to agricultural diversification, and enhance crop resilience. Ključne besede: fitokemija, kinolizidinski alkaloidi, odpornost poljščin, raznolikost kmetijstva, divji sorodniki poljščin, phytochemistry, quinolizidine alkaloid, crop resilience, agricultural diversification, crop wild relatives Objavljeno v DiRROS: 13.07.2026; Ogledov: 221; Prenosov: 126
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2. A new experimental system for studying defects and deuterium lattice location in single crystals by ion beam methodsEsther Punzón Quijorna, Mitja Kelemen, Roberto Galende-Pérez, Primož Vavpetič, Primož Pelicon, Sabina Markelj, 2026, izvirni znanstveni članek Povzetek: A high-precision 5-axis goniometer has been installed and commissioned at the INSIBA end station of the 2 MV Tandetron accelerator at the Jožef Stefan Institute. The system provides three translational and two rotational degrees of freedom with an angular resolution of 0.01°, enabling precise sample alignment for Rutherford Backscattering Spectrometry (RBS-C) and Nuclear Reaction Analysis (NRA-C), both in channeling mode. The goniometer is equipped with a versatile sample stage allowing continuous heating up to 1470 K, liquid-nitrogen cooling, and biasing up to 500 V. A load-lock system ensures vacuum integrity during sample exchange. The system supports simultaneous data acquisition from up to five detectors. Commissioning was performed using pristine and W-ion irradiated W(111) single crystals by 10.8 MeV W ions inducing damage of 0.02 and 0.2 dpa at RT, as well as D-plasma-exposed W(100) crystals containing deuterium-decorated defects. Simultaneous RBS-C and NRA-C measurements demonstrated consistent results with benchmark data, confirming the system’s precision and stability. The setup also enables in-situ RBS-C during thermal annealing, facilitating real-time studies of defect recovery and hydrogen behaviour. This system represents a major enhancement in ion beam analysis capabilities for investigating defect dynamics and light element trapping and transport in materials. Ključne besede: Tandetron, channeling Objavljeno v DiRROS: 27.03.2026; Ogledov: 430; Prenosov: 372
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3. Ion-specific kinetic energy distributions in MeV-SIMS : insights into electronic sputtering processesBoštjan Jenčič, Mirjana Sepahyar Lorentzen, Mitja Kelemen, Primož Pelicon, 2026, izvirni znanstveni članek Povzetek: Kinetic energy distributions of secondary ions produced by fast heavy primary ions (3 – 10 MeV 35Cl, charge states 4+, 5+ and 7+) were measured to interpret the dynamics of ion desorption and formation under electronic stopping regime. All measurements were done on organic targets, such as various amino-acids and polymers, and were conducted using a reflectron mass spectrometer with a reflector electrode used as a tool to discriminate ions below the selected kinetic energy. Typical average kinetic energies of molecular ions range from 0.5 to 5 eV, with some smaller monoatomic ions or ion clusters, such as H+ and H2+, exceeding 5 eV in average energy and exhibiting broader distributions. The type of cation was found to significantly affect kinetic energy distributions of organic molecules, with Ag adducts resulting in significantly lower kinetic energies and more pronounced “negative tailing” than e.g. protonated species. Systematic measurements across different target voltages ruled out gas-phase ion formation as a significant source of this tailing, which is more likely due to strong surface interactions or delayed ejection dynamics, specific to several secondary ion species. Additionally, fragmentation was found as a source of redistribution of internal energy into translational motion. On the other hand, the primary ion energy did not significantly affect the kinetic energy distributions of any analyzed species, thus confirming the dominance of the electronic stopping over nuclear stopping within the selected primary ion energy domain. Objavljeno v DiRROS: 23.03.2026; Ogledov: 394; Prenosov: 336
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4. The effect of nanocrystalline microstructure on deuterium transport in displacement damaged tungstenSabina Markelj, Thomas Schwarz-Selinger, Mitja Kelemen, Esther Punzón Quijorna, Janez Zavašnik, Andreja Šestan, David Dellasega, Gabriele Alberti, Mateo Passoni, 2023, izvirni znanstveni članek Povzetek: The influence of grain boundaries (GBs) on the deuterium (D) transport and the creation of defects in nanocrystalline tungsten (W) films deposited on a W substrate was studied. Samples with three different grain sizes were produced for this purpose: a sample with a film having nanometer-size grains, a sample with hundred nanometer-grained film and a sample with micrometer-grained film. Samples were irradiated by 20 MeV W ions at 300 K to create displacement damage and exposed to 300 eV D ions at 450 K to populate the created and any pre-existing defects. The D transport and retention was assessed by measuring D depth profiles after certain exposure times by nuclear reaction analysis (NRA) using a 3He ion beam. From the final D concentration in the damaged area we could determine the concentration of defects that trap hydrogen, showing that the sample with the smallest grain size had the highest D concentration and it decreases with the increase of the grain size. Therefore, in nanocrystalline tungsten irradiated at 300 K, GBs do not improve radiation resistance, which would lead to fewer defects. For the first time, we show experimentally, that D transport is faster inside the nanometer-grained sample as compared to the micrometer-grained sample, meaning that D atoms have enhanced bulk diffusion along GBs. Accidentally, the film thickness was so thin that the W irradiation reached the interface between the W film and substrate, where NRA showed enhanced retention of oxygen. At that depth, two times higher D concentration was observed compared to D concentration in the damaged area in the middle of the film indicating on defect stabilization due to the presence of oxygen. Ključne besede: grain boundaries, deuterium, tungsten, transport, displacement damage Objavljeno v DiRROS: 12.12.2025; Ogledov: 753; Prenosov: 472
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5. Deuterium retention and transport in ion-irradiated tungsten exposed to deuterium atoms : role of grain boundariesSabina Markelj, Janez Zavašnik, Andreja Šestan, Thomas Schwarz-Selinger, Mitja Kelemen, Esther Punzón Quijorna, Gabriele Alberti, Mateo Passoni, David Dellasega, 2024, izvirni znanstveni članek Povzetek: The influence of grain boundaries on deuterium (D) retention and transport was investigated in nanocrystalline tungsten (W) by exposing the samples to sub eV D atoms. Thin tungsten films with nanometer-sized grains were produced by pulsed laser deposition on tungsten substrates. Their grain size was increased up to one micrometer by thermal annealing in vacuum up to 1223 K. Irradiation damage was created by 20 MeV W ions at 290 K. The transmission electron microscopy analysis showed one order of magnitude larger dislocation density in nanometer-grained samples compared with the larger-grained samples. The samples were after W irradiation exposed to 0.3 eV D atoms at 600 K. D retention and D depth profiles were measured by nuclear reaction analysis. In the as-deposited nanometer-grained samples, D populated the damaged region more than three times faster than in the samples with larger grains, indicating that grain-boundaries increase D transport through the material. The concentration of defects was assessed by the final D concentration in the samples. The sample with a smallest grain size showed slightly larger D concentration in the irradiated area, but the difference in the D concentration is not substantial between different-grained samples. A large D concentration in the non-irradiated nanometer-grained sample was measured which is an indication for a high defect density in the initial material. From our observations, it can be postulated that the nanocrystalline microstructure did not substantially influence the generation of irradiation-induced defects by defect annihilation at grain boundaries. Ključne besede: deuterium, tungsten, grain boundaries, transport, displacement damage, retention Objavljeno v DiRROS: 12.12.2025; Ogledov: 730; Prenosov: 530
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6. Unveiling the radiation-induced defect production and damage evolution in tungsten using multi-energy Rutherford backscattering spectroscopy in channeling configurationSabina Markelj, Janez Zavašnik, Esther Punzón Quijorna, Andreja Šestan, Mitja Kelemen, 2024, izvirni znanstveni članek Povzetek: Radiation-induced defect production in tungsten was studied by a combination of experimental and simulation methods. The analysis of structural defects was performed using multi-energy Rutherford backscattering spectroscopy in channeling configuration (multi-energy C-RBS). To create different microstructures, (111) tungsten (W) single crystals were irradiated with W ions at two different doses (0.02 and 0.2 dpa) at 290 K. Detailed transmission electron microscopy (TEM) analysis of the samples revealed the presence of dislocation lines and loops of different sizes. The RBSADEC code was used to simulate the measured C-RBS spectra, recorded with four different He beam energies along the <111> direction. For the first time for tungsten, molecular dynamics (MD) simulations of overlapping cascades were used as input. The well-known method of randomly displaced atoms (RDA) was applied for comparison. RDA does not provide a satisfactory understanding of the nature of the induced defect structure. With MD, a very good agreement between the simulated and experimental spectra was obtained for the sample prepared at a lower dose, despite the fact that the absolute defect densities are two orders of magnitude higher than those found with TEM. A discrepancy is observed for the high-dose-irradiated sample, which is ascribed to the presence of extended defects such as dislocation lines, which are clearly observed by TEM, but cannot be formed in finite size MD cells. RBSADEC with MD cells as input can describe correctly the response of the RBS signal with analysing beam energy while RDA as input gives the wrong trend. Ključne besede: tungsten, defects, Rutherford backscattering spectroscopy in channeling configuration, displacement damage, molecular dynamic simulations, transmission electron microscopy Objavljeno v DiRROS: 12.12.2025; Ogledov: 877; Prenosov: 537
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7. Influence of near-surface helium on the deuterium retention and uptake in tungstenSabina Markelj, Thomas Schwarz-Selinger, Andreja Šestan, Janez Zavašnik, Mitja Kelemen, 2025, izvirni znanstveni članek Povzetek: The effect of near-surface helium (He) on deuterium (D) retention and uptake into the bulk of tungsten (W) was investigated. To quantify the He influence on D uptake, He was implanted close to the surface with 3 keV energy at different fluences and different temperatures. 20 MeV W irradiation was performed at room temperature after He implantation to create defects within the first 2.3 µm. Samples were then exposed to a low flux, low energy (300 eV/D) D ion beam at 450 K. The defects created by W ions trap penetrating D and make it hence possible to quantify D transport into depth below the He layer using 3He nuclear reaction analysis. Elastic recoil detection analysis enabled us to measure the D and He concentration depth profiles near the surface. Results show that D gets preferentially retained where He is implanted with D concentrations up to 10 at.%. At the same time D uptake beyond the He zone is reduced by a factor of 15 compared to a He-free W sample. Ključne besede: deuterium retention, displacement damage Objavljeno v DiRROS: 11.12.2025; Ogledov: 778; Prenosov: 418
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8. Microstructural analysis of tungsten single crystals irradiated by MeV W ions : the effect of irradiation dose and temperatureJanez Zavašnik, Andreja Šestan, Thomas Schwarz-Selinger, Esther Punzón Quijorna, Mitja Kelemen, Jan Predrag, Sabina Markelj, 2025, izvirni znanstveni članek Povzetek: We investigated the microstructural evolution of W(111) single crystals under high-energy self-ion irradiation at 290 K and 800 K, using complementary characterization techniques, including Scanning electron microscopy (SEM), Transmission electron microscopy (TEM), Rutherford backscattering spectrometry in channelling regime (RBS-C), Positron annihilation spectroscopy (PAS), and Nuclear reaction analysis (NRA). Irradiation with MeV W ions allowed for controlled defect formation, with dose and temperature significantly affecting defect type and distribution. At 290 K, interstitial defects evolved from dislocation loops at low doses (0.02 dpa) to dislocation networks at higher doses (0.2 dpa). In contrast, at 800 K, lower dislocation densities were observed, with nm-sized dots and isolated lines forming at 0.02 dpa and developing into longer dislocation lines (~30 nm) at 0.2 dpa. RBS-C spectra support these findings, showing a trend of increasing dislocation density with dose but decreasing with temperature. PAS analyses revealed mono-vacancies and small vacancy clusters (V2–V4) at 290 K, coalescing into larger clusters (V25–V50) at 800 K. NRA measurements indicated greater deuterium retention at 290 K than at 800 K, consistent with lower vacancy mobility at the lower temperature. Combined TEM, RBS-C, PAS, and NRA observations highlight increased vacancy mobility and defect recombination with temperature, forming larger vacancy clusters at 800 K. This comprehensive study provides quantitative insights into defect formation and evolution in W single crystals, presenting a comparative analysis of defect distributions across multiple techniques and revealing temperature-dependent mechanisms of microstructural change. Ključne besede: heavy-ion irradiation, structural defects Objavljeno v DiRROS: 11.12.2025; Ogledov: 822; Prenosov: 484
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10. Correlative imaging of structural biochemistry in plant and food quality research within an interoperable data acquisition platformMarjana Regvar, Boštjan Jenčič, Martin Šala, Aleš Kladnik, Iztok Dogša, Maja Koblar, Mitja Kelemen, Primož Vavpetič, Katarina Vogel-Mikuš, Ivan Kreft, Primož Pelicon, Paula Pongrac, 2025, izvirni znanstveni članek Povzetek: Correlative imaging is a powerful tool for revealing information on cell-type structures and their biochemistry, with the potential to inform healthier food choices and improved dietary recommendations. Determination of plant structures and their structural biochemistry advances our understanding of specific structures designed to store different biomolecules within cells and tissues. Compared to the classical biochemical separation techniques, the key advantage of sequential correlative imaging techniques is in relating spatial plant (micro)structures to their biochemistry in a nondestructive manner. Sequential imaging reported here comprises six methodologies on a single sample, a cross-section of a Tartary buckwheat (Fagopyrum tataricum) grain, namely, bright-field and autofluorescence microscopy, fluorescence microspectroscopy, MeV-secondary ion mass spectrometry, micro-particle-induced X-ray emission, scanning electron microscopy coupled with energy dispersive X-ray spectroscopy, and laser ablation-inductively coupled plasma-mass spectrometry. Results confirm that the stepwise addition of the desired information across several classes of biomolecules and several spatial scales informs the quality and safety of plant-based produce across scales. Therefore, a viable workflow is proposed, enabling sequential spatial analysis of grain and highlighting plant structures' in situ specificity. The advantages and disadvantages of the selected methodologies were critically evaluated. Ključne besede: autofluorescence, correlative molecular imaging, element distribution, grain tissues Objavljeno v DiRROS: 07.11.2025; Ogledov: 641; Prenosov: 512
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