1. Data from manuscript : analysis of plant and environmental samples for the quarantine fungus Phyllosticta citricarpa in four European citrus-growing areasPolona Kogovšek, Irene Vloutoglou, Valentino Bergamaschi, Neil Boonham, Maja Ferle, Sara Fišer, Eleni Kalogeropoulou, Andreas Kampletsas, Zala Kogej Zwitter, Athanasia Ligka, Roy Macarthur, Lucia Pirone, Maja Ravnikar, Luca Riccioni, Maria Teresa Valente, Darren Vella, Janja Zajc Žunič, Antonio Vicent, 2026, zaključena znanstvena zbirka raziskovalnih podatkov Povzetek: Phyllosticta citricarpa is the causal agent of citrus black spot (CBS), a disease affecting most citrus species and cultivars, particularly lemons (Citrus limon) and sweet oranges (C. sinensis). The pathogen causes fruit blemishes and premature fruit drop, leading to substantial yield and quality losses. Phyllosticta citricarpa is of global economic importance and is regulated by several citrus-growing countries, including those in the European Union (EU). The aim of this study was to develop a novel approach for early detection of P. citricarpa in environmental samples and to assess the status of P. citricarpa in selected citrus-growing areas of the EU where this species had previously been reported from leaf litter. Between 2018 and 2021, citrus plant material, air and rainwater samples were collected and analysed for the presence of Phyllosticta spp. in orchards in Greece, Italy, and Malta. Molecular analyses using qPCR assays targeting P. citricarpa were employed for the analysis of air and rainwater samples. The performance of the testing protocol was evaluated prior to sample analysis, and 1,000 conidia were determined to be the minimum number of spores required for reliable detection. No CBS symptoms were observed, and no evidence of P. citricarpa was found in collected citrus plant material, air, or rainwater samples. The only Phyllosticta species detected during this study was the endophyte P. capitalensis, isolated from citrus leaf litter in Greece. These findings support the results of official EU surveys, which indicate the current absence of P. citricarpa in the surveyed areas and demonstrate the value of integrating environmental monitoring with molecular diagnostics for plant health surveillance. The methodologies developed here offer a robust framework for early warning and rapid response, supporting efforts to prevent CBS outbreaks in Europe and can be adapted for other fungal pathogens. Ključne besede: citrus black spot, early detection, molecular diagnostics, Phyllosticta citricarpa, spore trapping Objavljeno v DiRROS: 30.03.2026; Ogledov: 283; Prenosov: 263
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2. Non-chemical control options against grey mould (Botrytis cinerea) on strawberry (Fragaria x anannasa)Klara Šavli, Janja Zajc Žunič, Franci Aco Celar, 2025, pregledni znanstveni članek Ključne besede: biological control, antagonistic fungi, antagonistic bacteria, secondary metabolites, non-chemical control, gry moul Objavljeno v DiRROS: 13.01.2026; Ogledov: 400; Prenosov: 213
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3. European beech decline in Slovenia is caused by a complex diseaseNikica Ogris, Ana Brglez, Andreja Kavčič, Janja Zajc Žunič, Maarten De Groot, Barbara Piškur, 2026, izvirni znanstveni članek Povzetek: In recent decades, the average crown defoliation of European beech (Fagus sylvatica) in Central Europe has been steadily increasing, resulting in a decline in tree vitality. This study aimed to identify the key factors contributing to this deterioration. Forty healthy and 40 damaged European beech trees were felled on a systematic 16 × 16 km grid, and all tree parts were sampled for fungi and insects. Additionally, soil samples were collected for Phytophthora testing. Of 6400 cultured samples, 5828 fungal cultures were classified into 251 morphotypes. The twenty most frequent morphotypes from each tree part were selected for further molecular identification, revealing 44 different fungal taxa. The most frequently isolated fungal species were Neonectria coccinea, Neohendersonia kickxii, Apiognomonia errabunda and Aureobasidium pullulans—all well-known and common endophytes. Surprisingly, Phytophthora species were detected in only three of the 80 soil samples. The most frequent insect species were Orchestes fagi, Phyllaphis fagi, Psilocorsis reflexella and Phyllonorycter maestingella. The results indicate that the decline of European beech in Central Europe is driven by a multifaceted interplay of biotic and abiotic factors, with fungi playing the most significant role. Analysis revealed distinct differences in fungal and insect communities across sampled tree parts, but not between healthy and damaged trees. This finding is crucial, as it shows that healthy trees host endophytes that can exhibit pathogenic traits under external stress factors. Therefore, resilience and sustainability of beech will depend on mitigation of stressors and implementation of adaptive management strategies that address the evolving environmental challenges. Ključne besede: Fagus sylvatica, decline, complex disease, drought, climate change, sustainability Objavljeno v DiRROS: 23.12.2025; Ogledov: 453; Prenosov: 278
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4. Agents of European beech declineNikica Ogris, Ana Brglez, Andreja Kavčič, Janja Zajc Žunič, Maarten De Groot, Barbara Piškur, 2025, zaključena znanstvena zbirka raziskovalnih podatkov Povzetek: Data collected in the project "Diseases, pests and drought stress of European beech at various climate change scenarios (V4-2026), Working package 2: Causes of the decline of European beech in Slovenia". Data was collected on 40 sampling plots, 39 plots on systematic grid 16 × 16 km and one additional plot in the Alps. On each sampling plot two trees were felled, altogether 80 trees: one visually healthy, and one damaged tree. Visual assessment of crown condition and damaging agents was evaluated following methods of ICP Forests. Rhizosphere soil was collected from each sampled tree for the Phytophthora baiting assay. For fungal isolations five parts of a tree were sampled: leaves, twigs (up to 20 mm in diameter), branches (over 20 mm in diameter), trunk, surface roots and root collar (up to 25 cm from the ground). Four samples from each tree part were collected. Finally, 20 samples per tree and 40 samples per plot were collected, yielding 1.600 samples in total. The samples were surface sterilized. Four subsamples were collected from one sample, altogether, 6.400 subsamples/tissue pieces. Four subsamples were plated on potato dextrose agar supplemented with streptomycin. Fungi and Phytophthora species were identified using molecular techniques, while insects were identified based on their morphological characteristics. Ključne besede: research data, Fagus sylvatica, decline, damage, complex disease, fungi, insects, Phytophthora, endophytes, stress Objavljeno v DiRROS: 25.09.2025; Ogledov: 759; Prenosov: 209
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5. First report of Aculeastrum (Pucciniastrum) americanum causing late leaf rust on raspberry in SloveniaHans-Josef Schroers, Urša Prislan, Vesna Kocjan, Wolfgang Maier, Janja Zajc Žunič, 2025, drugi znanstveni članki Ključne besede: plant diseases, Aculeastrum, urediniospores, spores, raspberry plant, genomic DNA, PCR Objavljeno v DiRROS: 16.07.2025; Ogledov: 978; Prenosov: 523
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6. Test performance study on qPCR assays for detection of Phyllosticta citricarpaTjaša Jakomin, Janja Zajc Žunič, Polona Kogovšek, 2025, izvirni znanstveni članek Povzetek: Citrus black spot (CBS), caused by the fungus Phyllosticta citricarpa, significantly affects citrus fruit marketability and can lead to premature fruit drop. Accurate and reliable detection of this quarantine pathogen is crucial, particularly for asymptomatic plant material. This study evaluated two qPCR assays, the EPPO recommended assay PC and assay Pc-TEF1, based on TEF region, for detecting P. citricarpa through a collaborative test performance study (TPS). DNA from the isolates of Phyllosticta spp. and other fungi was spiked into citrus fruit peel extracts (lemon, orange, and pomelo) and distributed among 13 laboratories. Sample and qPCR assay stability under typical transport conditions was confirmed, although prolonged storage affected Pc-TEF1 assay performance. The assays were assessed based on sensitivity, specificity, reproducibility, and repeatability. Both assays demonstrated high performance, with repeatability and reproducibility exceeding 95%. The PC assay, as expected, detected different related Phyllosticta species, while Pc-TEF1 showed higher specificity for P. citricarpa included in the TPS alone. Additionally, inhibitory effects were observed specifically in the pomelo peel samples, suggesting matrix-dependent variability. This TPS confirms that both PC and Pc-TEF1 qPCR assays are robust. Further evaluation of the qPCR assays would support the selection of the most reliable assays for the detection of P. citricarpa, contributing to the effective management of CBS disease in citrus production and trade. Ključne besede: test performance study, Phyllosticta citricarpa, real time PCR, TEF1, biotechnology Objavljeno v DiRROS: 07.05.2025; Ogledov: 1084; Prenosov: 1083
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7. Characterization of Aureobasidium pullulans isolates selected as biocontrol agents against fruit decay pathogensJanja Zajc Žunič, Anja Černoša, Alessandra Di Francesco, Raffaello Castoria, Filippo De Curtis, Giuseppe Lima, Hanene Badri, Haissam Jijakli, Antonio Ippolito, Cene Gostinčar, Polona Zalar, Nina Gunde-Cimerman, Wojciech J. Janisiewicz, 2020, izvirni znanstveni članek Povzetek: The "yeast-like" fungus, Aureobasidium pullulans, isolated from fruit and leaves exhibits strong biocontrol activity against postharvest decays on various fruit. Some strains were even developed into commercial products. We obtained 20 of these strains and investigated their characteristics related to biocontrol. Phylogenetic analyses based on internal transcribed spacer (ITS) and the D1/D2 domains of rRNA 28S gene regions confirmed that all the strains are most closely related to A. pullulans species. All strains grew at 0°C, which is very important to control decay at low storage temperature, and none grew at 37°C, which eliminates concern for human safety. Eighteen strains survived 2 hrs exposures to 50°C and two strains even survived for 24 hrs. Salt-tolerance varied; however, all strains grew on medium with 14% NaCl and 14 even with 18% NaCl. Such tolerances to high temperature and elevated salinity enable compatibility with postharvest practices. Substantial differences were observed in enzymatic activity, especially with respect to production of chitinases, xylanase, or urease. Siderophore production was detected and the ability to form biofilm varied widely between the strains. Knowledge of common characteristics of these strains may be very useful in future selection of the best antagonists within this species. Ključne besede: biological control, postharvest disease management, antagonism, physiological variability, stress tolerance Objavljeno v DiRROS: 04.03.2025; Ogledov: 1025; Prenosov: 574
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8. Prevalence of key resistance alleles associated with DMI and SDHI fungicide resistance in European Zymoseptoria tritici populations in 2022Stephen Kildea, Thies Marten Heick, Fiona Hutton, Charlotte Bataille, Louise Aldén, Janis Kaneps, Andres Mäe, Stephan Weigand, Janja Zajc Žunič, Anne-Sophie Walker, P. Hellin, 2025, izvirni znanstveni članek Ključne besede: Mycosphaerella graminicola, sensitivity, disease control, Septoria tritici blotch, triazole, wheat Objavljeno v DiRROS: 25.02.2025; Ogledov: 1052; Prenosov: 494
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9. First report of Colletotrichum incanum causing leaf spots on common bean in Europe (Slovenia)Hans-Josef Schroers, Janja Zajc Žunič, Barbara Pipan, Vladimir Meglič, Eva Kovačec, Metka Žerjav, 2024, drugi znanstveni članki Ključne besede: leaf spots, Serbia, pathogen detection, common bean, phatoggenecity Objavljeno v DiRROS: 23.10.2024; Ogledov: 1186; Prenosov: 381
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10. First Report of Globisporangium (Pythium) mastophorum causing Damping-off / Root Rot on Parsley in SloveniaJanja Zajc Žunič, Eva Kovačec, Urša Prislan, Aleksandra Podboj Ronta, Metka Žerjav, Hans-Josef Schroers, 2024, drugi znanstveni članki Ključne besede: damping-off / Root Rot, parsley, pathogen detection, common bean, phatoggenecity Objavljeno v DiRROS: 23.10.2024; Ogledov: 1390; Prenosov: 374
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