1. Genotoxic effects of graphene quantum dots in an advanced in vitro human hepatic 3D model : version v1Irma Durmišević, Anja Haverić, Sonja Žabkar, Alja Štern, Bojana Žegura, 2026, zaključena znanstvena zbirka raziskovalnih podatkov Povzetek: Graphene quantum dots (GQDs) are nanoscale carbon-based materials characterized by a tunable bandgap and unique physicochemical features. Typically composed of only a few atomic layers and measuring under 10 nm in lateral dimension, they show excellent biocompatibility and low toxicity, making them attractive for biomedical uses. Their strong photoluminescent properties support applications in optical and electrical sensing, bioimaging, cancer therapy, and the development of high‑performance nanocomposites.
In this study, two types of GQDs—green‑emitting (G‑GQD) and blue‑emitting (B‑GQD)—were examined, differing primarily in their optical properties, particularly the colour of emitted light dictated by their bandgap. Potential genotoxicity was evaluated using a 3D human hepatocellular carcinoma (HepG2) spheroid model. DNA damage induction was assessed with the comet assay, after 24‑hour exposure to 12.5, 25, 50, and 100 µg/mL of B‑ and G‑GQDs.
Single-cell suspensions from spheroids were obtained using a combination of mechanical disruption and enzymatic digestion (Štempar et al., 2019). Following 24-hour exposure to B- and G-GQD at concentrations of 12.5, 25, 50, and 100 µg/mL (corresponding to 5, 10, 20, and 40 µg/cm2) and 30 μg/mL BaP as the positive control, spheroids were collected and treated with a mixture of collagenase and TrypLE, diluted in serum-free medium (1:20:9), for 10 minutes. Spheroids were then mechanically dissociated into a single-cell suspension by pipetting. The subsequent steps followed the standard monolayer cell culture protocol. Briefly, 30 μL of the cell suspension was mixed with 70 μL of 1% low-melting-point (LMP) agarose and applied to fully frosted slides pre-coated with a layer of 1% normal-melting-point (NMP) agarose. The slides were lysed in a solution containing 0.1 M EDTA, 2.5 M NaOH (pH 10), 0.01 M Tris, and 1% Triton X-100 for 1 hour at 4°C. DNA was unwound and electrophoresed in an alkaline solution (300 mM NaOH, 1 mM EDTA, pH 13) for 20 minutes at 25 V and 300 mA (0.5–1 V/cm). The slides were then neutralised using 0.4 M Tris buffer (pH 7.5), and the gels were stained with GelRed. Images were captured and analysed using an Eclipse 800 fluorescence microscope (Nikon, Japan) equipped with a Basler camera and the Comet IV image analysis software (Perceptive Instruments, UK). Three independent experiments were conducted, with 50 randomly selected nuclei analysed per experimental condition. Results were expressed as the percentage of tail DNA. Ključne besede: nanomaterials, graphene quantum dots, HepG2 spheroids, toxicity Objavljeno v DiRROS: 31.07.2026; Ogledov: 114; Prenosov: 79
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2. In vitro genotoxicity assessment of graphene quantum dots using a 3D HepG2 model : version v1Irma Durmišević, Anja Haverić, Katja Kološa, Bojana Žegura, 2026, zaključena znanstvena zbirka raziskovalnih podatkov Povzetek: Graphene quantum dots (GQDs) are nano-sized fragments of graphene sheets, with great potential for applications in optics, electrochemistry, and biomedicine, including drug delivery. In this study, two types of GQDs were investigated: green-emitting (G-GQD) and blue-emitting (B-GQD) and their genotoxic potential was examined on the protein level. Flow cytometric analysis of γH2AX, a marker of DNA double-strand breaks, and phosphorylated histone H3 (p-H3), a marker of aneugenic activity, was performed in HepG2 spheroids after 24 hours of exposure to G-GQDs and B-GQDs. HepG2 spheroids were exposed to graded concentrations of B- and G-GQD (12.5, 25, 50, and 100 μg/mL) for 24 hours, respectively. Spheroids were dissociated into single-cell suspensions, washed twice with 1x PBS and fixed in 4% PFA. For flow cytometric analysis, cells were labelled with anti-H2AX pS139 antibody and anti-histone H3 pS128 antibody. REA-APC and REA-PE controls were applied to exclude non-specific antibody binding. For each sample, 10,000 events were acquired using a MACSQuant Analyzer 10 flow cytometer and MACSQuantify™ software (Miltenyi Biotech, Germany). Raw data were exported from the MACSQuantify software and analysed with FlowJo V10 software (Becton Dickinson, New Jersey, USA). Ključne besede: nanomaterials, graphene quantum dots, HepG2 spheroids, toxicity Objavljeno v DiRROS: 31.07.2026; Ogledov: 117; Prenosov: 78
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3. In vitro genotoxicity assessment of commercially available graphene quantum dots in human peripheral blood cells and salivary leukocytesTamara Ćetković Pećar, Irma Durmišević, Mirta Milić, Anja Haverić, Bojana Žegura, 2026, izvirni znanstveni članek Povzetek: Commercially available graphene quantum dots (GQDs) are promising nanomaterials for applications in research and preclinical diagnostics, drug delivery, and bioimaging. Their bioactivity is highly dependent on dose, route of exposure, duration, cell type, uptake mechanisms, tissue and cellular distribution, and physicochemical properties. This study aimed to evaluate genotoxic, cytotoxic, and cytostatic endpoints of blue- (B-GQDs) and greenemitting (G-GQDs) GQDs in human blood and salivary leukocytes. GQDs were tested at concentrations ranging from 2.5 to 100 μg/mL using distinct treatment periods. Fourier transform infrared spectroscopy (FTIR), trypan blue exclusion, comet, and cytokinesisblock micronucleus cytome (CBMN cyt) assays were performed. FTIR analysis revealed that G-GQDs, unlike B-GQDs, exhibit an absorption band typically associated with amine functional groups, which may contribute to their pronounced genotoxic effects. Peripheral blood mononuclear cells and salivary leukocytes showed higher sensitivity to G-GQDs compared to whole blood samples. Although no cytotoxic effects were observed, both GQDs induced significant DNA damage, with G-GQDs demonstrating greater genotoxic potential. These findings demonstrate that GQDs can induce DNA damage in the absence of detectable cytotoxic effects under the conditions tested, highlighting the importance of considering both physicochemical properties and cellular models in the safety assessment of nanomaterials. Ključne besede: GQDs, FTIR, DNA damage, cell viability, micronuclei Objavljeno v DiRROS: 23.06.2026; Ogledov: 220; Prenosov: 179
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4. In vitro toxicity assessment of graphene quantum dots using a 3D HepG2 modelIrma Durmišević, Anja Haverić, Sonja Žabkar, Alja Štern, Katja Kološa, Petra Jenuš, Iza Rozman, Bojana Žegura, 2026, izvirni znanstveni članek Povzetek: In the present study, two types of graphene quantum dots (GQDs) were investigated: green-emitting (G-GQDs) and blue-emitting (B-GQDs). Physicochemical characterisation was performed using transmission electron microscopy (TEM), zeta potential, and hydrodynamic radius measurements to evaluate the morphology, particle size, aggregation behaviour, and colloidal stability of the GQDs in both water and cell culture medium. G-GQDs exhibited superior colloidal stability and more uniform dispersion than B-GQDs, whereas both types showed reduced aggregation and surface charge in cell culture medium due to protein corona formation. Toxicological characterisation was performed using an in vitro human hepatocellular carcinoma (HepG2) 3D spheroid model, with GQDs exposures up to 250 µg/mL (100 µg/cm2). Cytotoxicity was measured using the CellTiter-Glo luminometric assay, while genotoxicity was evaluated by the comet assay and flow cytometric analysis of γH2AX and phosphorylated histone H3 (p-H3) after 24 h of exposure. Both GQDs induced dose-dependent cytotoxic effects in HepG2 spheroids. At non-cytotoxic concentrations, a dose-dependent increase in DNA damage was observed, as determined by the comet assay. However, no evidence of DNA double-strand breaks (γH2AX) or elevated p-H3 levels was detected, suggesting the absence of clastogenic and aneugenic activity. The observed DNA single-strand breaks may be partly attributed to reactive oxygen species induction. These results indicate that, although GQDs induced cytotoxicity and single-strand DNA damage, no clear evidence of more severe genotoxic effects was observed under the tested conditions. Further studies are warranted to elucidate underlying mechanisms and comprehensively assess the safety profile of GQDs for biomedical applications. Ključne besede: nanomaterials, graphene quantum dots, HepG2 spheroids, toxicity Objavljeno v DiRROS: 19.03.2026; Ogledov: 518; Prenosov: 192
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