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Iskalni niz: "avtor" (Blaž Koritnik) .

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1.
Awake glioma surgery with intraoperative mapping : predictors of language outcome and survival
Klemen Krašovec, Mihela Petovar, Tilen Žele, Ninna Kozorog, Tomaž Šmigoc, Janez Ravnik, Blaž Koritnik, Tomaž Velnar, 2026, izvirni znanstveni članek

Povzetek: Background: Awake craniotomy with intraoperative mapping is the standard of care for gliomas located in language-eloquent regions, enabling maximal safe resection while preserving functional integrity. This study aimed to identify clinical and intraoperative predictors of postoperative language worsening and overall survival in patients undergoing awake surgery for malignant glioma. Methods: In this retrospective multicenter cohort study, 37 patients with malignant glioma in the dominant hemisphere underwent awake craniotomy with intraoperative mapping. Clinical, radiological, intraoperative, and postoperative variables were analyzed. Language outcome was classified as unchanged or worsened. Univariable and parsimonious multivariable logistic regression analyses were used to identify predictors of language worsening. Overall survival was assessed using univariable Cox regression. Results: Postoperative language worsening occurred in six patients (16.2%). Increasing age was associated with higher odds of postoperative language worsening in univariable logistic regression (OR 1.12 per year, 95% CI 1.02–1.23, p = 0.019). Due to the limited number of outcome events, multivariable logistic regression was not performed. In survival analysis, increasing age (HR 1.10, 95% CI 1.05–1.16, p < 0.001) and WHO grade 4 (HR 18.15, 95% CI 3.91–84.19, p < 0.001) were associated with shorter overall survival. No statistically significant association between extent of resection and overall survival was detected in this small cohort. Conclusions: Awake glioma surgery with intraoperative mapping was associated with favorable language outcomes in most patients at the 3-month follow-up. Increasing age was associated with postoperative language worsening in univariable analysis. These findings should be interpreted as exploratory because of the limited sample size and low number of outcome events. Larger prospective studies with standardized longitudinal language assessment are needed.
Ključne besede: awake craniotomy, glioma, brain mapping, language, direct electrical stimulation, neuropsychological tests, survival, surgical procedures
Objavljeno v DiRROS: 28.08.2026; Ogledov: 138; Prenosov: 80
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2.
SOD1 variants in patients with amyotrophic lateral sclerosis in Central Eastern Europe : from genetic testing to SOD1 targeted therapy
Magui Khazaal, Paula Stretavská, Magdalena Kuźma-Kozakiewicz, Krzysztof Nieporęcki, Adam Betík, Eva Vlčková, Monika Turčanová Koprušáková, Robert Petrovic, Hakan Cetin, Omar Keritam, Blaž Koritnik, 2026, izvirni znanstveni članek

Povzetek: Background: Amyotrophic lateral sclerosis (ALS) is one of the most devastating fatal motor neuron diseases, characterized by progressive degeneration of motor neurons in the brain and spinal cord. A significant advance in ALS therapy was achieved with the recent European Medicines Agency approval of Tofersen, the first antisense oligonucleotide (ASO) specifically targeting SOD1 mRNA, a key genetic determinant of the disease. Yet, despite its clinical relevance, data on SOD1-ALS in Central Eastern Europe remain scarce. Methods: Here, we present a multicentric study across six countries—Austria, Czechia, Poland, Hungary, Slovakia, and Slovenia—representing approximately 16% of the European Union's population. We report all pathogenic, likely pathogenic, and uncertain SOD1 variants, along with the phenotypic features, including heritability, age, site of onset, and survival. We also assessed the availability of genetic testing, counseling, and access to Tofersen therapy across the region. Results: Out of 1200 patients with confirmed ALS, we identified 24 distinct pathogenic SOD1 variants in a total of 67 patients (median age at onset 47 [40–55] years), of whom 65.7% had familial ALS (fALS) and 34.3% had sporadic ALS (sALS). We characterized the associated phenotypes and reported that 42 patients are currently receiving Tofersen therapy. Conclusion: This study provides the first comprehensive overview of SOD1-ALS in Central Eastern Europe. Our findings underscore the importance of genetic testing and counseling, as well as equitable access to targeted therapies such as Tofersen to advance patient-specific care in this region.
Ključne besede: tofersen amyotrophic lateral sclerosis, Central Eastern Europe, motor neuron disease, SOD1, targeted therapy
Objavljeno v DiRROS: 28.08.2026; Ogledov: 131; Prenosov: 89
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3.
Risdiplam treatment in adults with spinal muscular atrophy : a single-center, real-world study
Lea Leonardis, Pija Pukšič, Sara Kadenšek, Blaž Koritnik, 2026, izvirni znanstveni članek

Povzetek: Background: Spinal muscular atrophy (SMA) is a progressive, degenerative neuromuscular disease caused by mutations in the survival motor neuron 1 (SMN1) gene leading to muscle weakness and respiratory impairments. Risdiplam is an oral disease-modifying therapy approved for the treatment of SMA in both pediatric and adult patient populations; however, real-world data on the treatment of adults with SMA are limited. Methods: This real-world, retrospective study analyzed data from 11 patients with Types 2, 3, and 4 SMA who had been treated with risdiplam at a single center in Slovenia and had up to 30 months of follow-up. Disease progression was assessed using motor and respiratory outcome measures. Results: At baseline, patients had a mean (SD) age of 51 (20) years; range, 27–82 years. Baseline motor and respiratory function varied across the patient group. From baseline to month 30, stable motor function was observed for most patients over the treatment period, with no significant overall effect of time for Revised Upper Limb Module (F = 1.44, p = 0.23) or Revised Hammersmith Scale (F = 0.54, p = 0.74). Respiratory function was generally stable over 30 months of treatment with risdiplam: from baseline to month 30, no significant overall effect of time was observed for vital capacity (F = 1.20, p = 0.32), forced vital capacity (F = 0.93, p = 0.47), peak expiratory flow (F = 0.94, p = 0.46), maximal inspiratory pressure (F = 0.65, p = 0.66), maximal expiratory pressure (F = 1.25, p = 0.31), and sniff nasal inspiratory pressure (F = 1.10, p = 0.38). Conclusions: This real-world study suggests that risdiplam treatment for adults with Types 2, 3, and 4 SMA generally stabilizes motor and respiratory function over 30 months. These results add to the limited database of risdiplam treatment outcomes in adults with SMA, support the continued use of risdiplam for adults with SMA, and may help patients and clinicians to understand and assess treatment options.
Ključne besede: spinal muscular atrophy, risdiplam, adults, motor function, respiratory function, real-world study
Objavljeno v DiRROS: 03.08.2026; Ogledov: 176; Prenosov: 112
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4.
The endocrine manifestations of adults with spinal muscular atrophy
Matej Rakuša, Blaž Koritnik, Lea Leonardis, Katja Goričar, Tjaša Rudolf, Dejan Firbas, Žiga Snoj, Mojca Jensterle Sever, 2024, izvirni znanstveni članek

Povzetek: Introduction/Aims Changes in body composition in patients with spinal muscular atrophy (SMA) can cause endocrine abnormalities that are insufficiently studied in adults. We aimed to assess the endocrine profile in a cohort of adults with SMA. Second, we compared body composition and endocrine profiles between nonambulatory and ambulatory patients and between different types of SMA. Methods The cross-sectional study included 29 SMA patients (18 [62.1%] males and 11 [37.9%] females) of median age 44 (IQR 30–51.5) years with type 2, 3, or 4. Body composition was measured by bioimpedance. Morning blood samples were drawn for glycated hemoglobin (HbA1c), lipid profile, testosterone, cortisol, and insulin-like growth factor-1 (IGF-1). Blood glucose, insulin, and beta-hydroxybutyrate (BHB) were measured during a 75 g oral glucose tolerance test. The homeostatic model assessment for insulin resistance index was calculated. Results In total, 75.9% of patients had increased fat mass (FM), with 51.7% having an increase despite normal body mass index. Ambulation was the most important discriminating factor of body composition. 93.1% of patients had metabolic abnormalities, including hyperglycemia, insulin resistance, and dyslipidemia. Increased BHB, a marker of ketosis, was present in more than a third of patients. Functional hypogonadism was present in half of male patients. Testosterone and IGF-1 negatively correlated with FM. Discussion Adult patients with SMA had abnormal body composition and highly prevalent metabolic disturbances that might increase cardiometabolic risk. Because treatments have modified the course of SMA, it is important to investigate whether these observations translate into clinically relevant outcomes.
Ključne besede: spinal muscular atrophy, endocrine manifestations, adults
Objavljeno v DiRROS: 15.06.2026; Ogledov: 267; Prenosov: 242
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Genetic variability in oxidative stress, inflammatory, and neurodevelopmental pathways: impact on the susceptibility and course of spinal muscular atrophy
Maruša Barbo, Blaž Koritnik, Lea Leonardis, Tanja Blagus, Vita Dolžan, Metka Ravnik-Glavač, 2024, izvirni znanstveni članek

Povzetek: The spinal muscular atrophy (SMA) phenotype strongly correlates with the SMN2 gene copy number. However, the severity and progression of the disease vary widely even among affected individuals with identical copy numbers. This study aimed to investigate the impact of genetic variability in oxidative stress, inflammatory, and neurodevelopmental pathways on SMA susceptibility and clinical progression. Genotyping for 31 genetic variants across 20 genes was conducted in 54 SMA patients and 163 healthy controls. Our results revealed associations between specific polymorphisms and SMA susceptibility, disease type, age at symptom onset, and motor and respiratory function. Notably, the TNF rs1800629 and BDNF rs6265 polymorphisms demonstrated a protective effect against SMA susceptibility, whereas the IL6 rs1800795 was associated with an increased risk. The polymorphisms CARD8 rs2043211 and BDNF rs6265 were associated with SMA type, while SOD2 rs4880, CAT rs1001179, and MIR146A rs2910164 were associated with age at onset of symptoms after adjustment for clinical parameters. In addition, GPX1 rs1050450 and HMOX1 rs2071747 were associated with motor function scores and lung function scores, while MIR146A rs2910164, NOTCH rs367398 SNPs, and GSTM1 deletion were associated with motor and upper limb function scores, and BDNF rs6265 was associated with lung function scores after adjustment. These findings emphasize the potential of genetic variability in oxidative stress, inflammatory processes, and neurodevelopmental pathways to elucidate the complex course of SMA. Further exploration of these pathways offers a promising avenue for developing personalized therapeutic strategies for SMA patients.
Ključne besede: inflammation, neurodegeneration, neurodevelopment, oxidative stress, single nucleotide polymorphism, spinal muscular atrophy
Objavljeno v DiRROS: 04.06.2026; Ogledov: 285; Prenosov: 257
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7.
Computing linkage disequilibrium aware genome embeddings using autoencoders
Gizem Taş, Timo Westerdijk, Eric Posma, Marleen Balvert, 2024, izvirni znanstveni članek

Povzetek: Motivation. The completion of the genome has paved the way for genome-wide association studies (GWAS), which explained certain proportions of heritability. GWAS are not optimally suited to detect non-linear effects in disease risk, possibly hidden in non-additive interactions (epistasis). Alternative methods for epistasis detection using, e.g. deep neural networks (DNNs) are currently under active development. However, DNNs are constrained by finite computational resources, which can be rapidly depleted due to increasing complexity with the sheer size of the genome. Besides, the curse of dimensionality complicates the task of capturing meaningful genetic patterns for DNNs; therefore necessitates dimensionality reduction. Results. We propose a method to compress single nucleotide polymorphism (SNP) data, while leveraging the linkage disequilibrium (LD) structure and preserving potential epistasis. This method involves clustering correlated SNPs into haplotype blocks and training per-block autoencoders to learn a compressed representation of the block’s genetic content. We provide an adjustable autoencoder design to accommodate diverse blocks and bypass extensive hyperparameter tuning. We applied this method to genotyping data from Project MinE, and achieved 99% average test reconstruction accuracy—i.e. minimal information loss—while compressing the input to nearly 10% of the original size. We demonstrate that haplotype-block based autoencoders outperform linear Principal Component Analysis (PCA) by approximately 3% chromosome-wide accuracy of reconstructed variants. To the extent of our knowledge, our approach is the first to simultaneously leverage haplotype structure and DNNs for dimensionality reduction of genetic data.
Ključne besede: genome-wide association studies, curse of dimensionality, linkage disequilibrium
Objavljeno v DiRROS: 04.06.2026; Ogledov: 263; Prenosov: 378
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8.
MyomiR networks in spinal muscular atrophy
Maruša Barbo, Blaž Koritnik, Lea Leonardis, Vita Dolžan, Metka Ravnik-Glavač, 2026, izvirni znanstveni članek

Povzetek: Disease-modifying therapies have significantly influenced the clinical course of spinal muscular atrophy (SMA), yet objective biomarkers for monitoring disease progression and treatment remain limited. We profiled four muscle-specific miRNAs (myomiRs), ten bioinformatically predicted mRNA targets, two functionally associated lncRNAs, and SMN transcripts in whole blood from 50 adults with SMA types II-IV. Using RT-qPCR, we assessed associations between baseline RNA expression and demographic and clinical parameters, including SMA type, ambulatory status, motor and respiratory function, and explored longitudinal changes during nusinersen (24 months) and risdiplam (6/12 months) treatment. At baseline, miR-206 was higher in type III than in type II and in ambulatory compared to non-ambulatory patients, while it correlated positively with motor and respiratory function and with SMN mRNA variants (total, FL, and ∆7). SMN transcript levels were higher in patients with more SMN2 copies and in ambulatory patients and showed positive correlations with motor and respiratory function. miR-133a-3p and miR-133b correlated negatively with upper limb and respiratory function, and sex-related differences were observed for miR-133a-3p, FGFR1, ANXA2, and LINCMD1. During nusinersen treatment, we observed a decrease in miR-206, LINCMD1, and lnc-GJA1-2, alongside modest reductions in SMN-∆7 and total SMN. In contrast, risdiplam induced a peripheral splicing shift: SMN-FL and the FL/∆7 ratio increased, while SMN-∆7 decreased; miR-133a-3p also decreased at 6 months. By integrating muscle-derived RNAs, particularly miR-206, with blood SMN2 splicing changes, we propose a composite, blood-based biomarker approach for assessing SMA status and treatment-associated molecular changes and highlight myomiR-lncRNA-mRNA networks that suggest disease-relevant mechanisms.
Ključne besede: SMN2 splicing, biomarkers, spinal muscular atrophy, IncRNA, miR-206, myomiR
Objavljeno v DiRROS: 15.05.2026; Ogledov: 325; Prenosov: 305
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9.
Large-scale exome analyses reveal new rare variant contributions in amyotrophic lateral sclerosis
Paul J. Hop, Boris Rogelj, Blaž Koritnik, Janez Zidar, Jan H. Veldink, 2026, izvirni znanstveni članek

Povzetek: Amyotrophic lateral sclerosis (ALS) is a heritable disorder where rare variants with low-to-moderate penetrance are thought to dominate genetic risk. To identify such rare variants, we harmonized and analyzed exome data from 22 cohorts, totaling 17,919 individuals with ALS and 200,703 controls across discovery and replication phases. Rare variant analyses identified several new risk genes, with replication confirming association of YKT6 and supporting HTR3C, GBGT1 and KNTC1. We also provide strong, independent validation for genes with limited previous evidence: ARPP21, DNAJC7 and CFAP410. Notably, in ARPP21, we identified a new high-effect variant (p.P747L) and confirmed that p.P563L is an ALS-associated variant leading to an aggressive disease course. Beyond new discoveries, our analyses largely recapitulated the known genetic architecture of ALS, identifying risk variants in over 20% of cases and supporting a cumulative oligogenic risk model. These findings highlight new translational targets and show that rare variant analyses capture substantially more genetic risk than common variant genome-wide association studies.
Ključne besede: genetics, neuroscience, rare variant analysis, amyotrophic lateral sclerosis (ALS), genetic risk factors
Objavljeno v DiRROS: 24.04.2026; Ogledov: 611; Prenosov: 355
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10.
Switching treatment to cipaglucosidase alfa plus miglustat positively affects patient-reported outcome measures in patients with late-onset Pompe disease
Priya S. Kishnani, Barry J. Byrne, Kristl G. Claeys, Jordi Diaz-Manera, Mazen M. Dimachkie, Hani Kushlaf, Tahseen Mozaffar, Mark Roberts, Benedikt Schoser, Noemi Hummel, 2024, izvirni znanstveni članek

Povzetek: Background: Late-onset Pompe disease (LOPD), a rare autosomal recessive multisystemic disorder, substantially impacts patients’ day-to-day activities, outcomes, and health-related quality of life (HRQoL). The PROPEL trial compared cipaglucosidase alfa plus miglustat (cipa+mig) with alglucosidase alfa plus placebo (alg+pbo) in adult patients with LOPD over 52 weeks and showed improved motor and respiratory function in patients switching treatment from standard-of-care enzyme replacement therapy (ERT) to cipa+mig at baseline. This study evaluated the impact of cipa+mig on patient-reported outcomes (PROs), including HRQoL in ERT-experienced patients, using data from PROPEL. Methods: PROs evaluated included the Subject’s Global Impression of Change (SGIC), Patient-Reported Outcomes Measurement Information System (PROMIS) Physical Function Short Form 20a, PROMIS Fatigue Short Form 8a, Raschbuilt Pompe-specific Activity (R-PAct), and European Quality of Life-5 Dimensions 5 Response Levels (EQ-5D-5L). The proportions of responders in the cipa+mig arm and the alg+pbo arm were compared via chi-squared or Fisher’s exact test (patient-level responder analysis), and least squares (LS) mean differences were calculated for change from baseline at Week 52 of the PRO measures (group-level analysis). Results: At Week 52, patient-level SGIC responder and group-level SGIC analyses favored cipa+mig compared with alg+pbo across all SGIC domains (e.g. 90 vs. 59% responders in the cipa+mig vs. the alg+pbo group for SGIC ability to move around; P=0.0005; and LS mean difference 0.385; P=0.02). Similarly, PROMIS Physical Function and Fatigue domains numerically favored cipa+mig in both analyses (e.g. 50 vs. 40% responders in the cipa+mig vs. alg+pbo arm for PROMIS Physical Function; P=0.37; and LS mean difference 3.1; P=0.11). R-PAct for both treatment groups was similar in the patient-level responder analysis, but numerically favored alg+pbo in the group-level analysis (35% responders in both arms; P=0.95; and LS mean difference −0.8; P=0.48). Self-care, usual activities, and depression anxiety domains of EQ-5D-5L numerically favored cipa+mig in both analyses (e.g. 20 vs. 12% responders in the cipa+mig vs. alg+pbo arm for EQ-5D-5L self-care; P=0.54; and LS mean difference −0.108; P=0.52). Conclusions: Overall, switching treatment from alglucosidase alfa to cipa+mig positively impacted PRO measurements during the double-blind period of PROPEL.
Ključne besede: Pompe disease, patient-reported outcomes, health-related quality of life, SARS-Cov-2
Objavljeno v DiRROS: 26.02.2026; Ogledov: 546; Prenosov: 294
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