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11.
New records of opistobranch gastropods in the waters off Slovenia (Gulf of Trieste, Northern Adriatic Sea)
Lovrenc Lipej, Borut Mavrič, Jan Simič, Domen Trkov, 2014, original scientific article

Abstract: The paper deals with four opisthobranch molluscs, which were found in the Slovenian marine waters as new records. The pleurobranchomorph Pleurobranchea meckeli was found on two occasions on muddy detritic bottom in the Gulf of Piran in June of 2013 and 2014. The nudibranch Favorinus branchialis was found in May and June 2014 on turf vegetation in a very shallow area off the pier in Koper harbour. Its spawn with white eggs was also found nearby. The second nudibranch Facelina rubrovittata was found in March 2010 crawling in the intertidal zone of the Nature reserve Strunjan. The third nudibranch Dondice banyulensis was found in waters of the Nature Monument Debeli rtic on sedimentary bottom. With the fi nding of these four species, the total number of opisthobranchs recorded to date in the Slovenian part of the Adriatic Sea increased to 75 species.
Keywords: opistobranch fauna, sea, Slovenia, Mediterranean Sea, Gulf of Trieste
Published in DiRROS: 02.08.2024; Views: 379; Downloads: 165
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12.
Coralline algae on biogenic formations in marine waters off Slovenia (northern Adriatic Sea)
Martina Orlando-Bonaca, Borut Mavrič, Lovrenc Lipej, Sara Kaleb, Annalisa Falace, 2017, original scientific article

Abstract: Two major biogenic formations, composed mainly by dead corallites of the Mediterranean stony coral (Cladocora caespitosa), have been recently studied in Slovenian marine waters. The paper presents new data about the presence of coralline algae on the biogenic formation situated off Cape Ronek and off Cape Debeli rtič. Coralline algae are very important for the creation, development and maintenance of calcareous bio-concretions that offer new niches for many invertebrates and other algae. They are listed as important builders of the coralligenous biocoenosis in the "Draft Lists of coralligenous/maërl populations and of main species to be considered by the inventory and monitoring" of the RAC-SPA, and should be further deeply studied and appropriately protected.
Keywords: coralline algae, biogenic formations, circalittoral, northern Adriatic, Slovenia
Published in DiRROS: 01.08.2024; Views: 318; Downloads: 294
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13.
Molecular diversity of ʼCandidatus Phytoplasma maliʼ and ʼCa. P. prunorumʼ in orchards in Slovenia
Marina Dermastia, Dorian Dolanc, Petra Mlinar, Nataša Mehle, 2018, original scientific article

Abstract: Phytoplasmas from the 16Sr-X apple proliferation (AP) group are quarantine species in Europe and causal agents of the most important diseases of fruit trees within the family Rosaceae, namely apple proliferation, European stone fruit yellows and pear decline. In this study, a detailed insight into the molecular diversity of isolates of two phytoplasmas from the AP group, i. e. ‘Candidatus Phytoplasma mali’ and ‘Ca. P. prunorum’ obtained from different orchards in Slovenia, was estimated by a multilocus sequence typing, based on analysis of the genomic regions of aceF, pnp, secY and imp. With seven and five genotypes defined for ‘Ca. P. mali’ and ‘Ca. P. prunorum’ isolates, respectively, imp was the most variable among the applied markers. On the other hand, pnp was the least variable with three genotypes defined for ‘Ca. P. mali’ isolates and only one for ‘Ca. P. prunorum’ isolates. The presented results complete the survey of the AP group phytoplasma diversity in Slovenia, which has started with the recent analysis of the ‘Ca. P. pyri’. The comparison of results with those from several European countries shows an important genetic diversity of the Slovenian genotypes with some previously unknown. The genotype distribution reflects the geographic position of Slovenia. Additional grafting experiments with apricot trees tolerant to ‘Ca. P. prunorum’ demonstrated that the tolerance status is transmissible. Some possible mechanisms involved in the process are discussed.
Keywords: apple proliferation, multilocus sequence typing, phytoplasma diversity, Slovenia
Published in DiRROS: 24.07.2024; Views: 299; Downloads: 207
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14.
Inventory and DNA-barcode library of ground-dwelling predatory arthropods from Krokar virgin forest, Slovenia
Žan Kuralt, Urška Ratajc, Neža Pajek Arambašić, Maja Ferle, Matic Gabor, Ivan Kos, 2022, original scientific article

Abstract: Background At a time of immense human pressure on nature and the resulting global environmental changes, the inventory of biota - especially of undisturbed natural areas - is of unprecedented value as it provides a baseline for future research. Krokar, an example of such an undisturbed area, is the largest virgin forest remnant in Slovenia. It is located in the Dinaric Alps, which are believed to harbour the most diverse fauna of soil invertebrates in Europe. Nevertheless, the soil fauna of the Krokar virgin forest has not been thoroughly studied. Moreover, modern taxonomic approaches often rely on genetic information (e.g. DNA-barcodes), while extensive reference libraries from the Dinaric area are lacking. Our work, therefore, focused on addressing this lack of faunistic and genetic data from the Dinaric area. New information A total of 2336 specimens belonging to 100 taxa (45 spiders, 30 centipedes, 25 ground-dwelling beetles) were collected and deposited to GBIF. DNA-barcodes of 124 specimens belonging to 73 species were successfully obtained and deposited in GenBank and BOLD databases.
Keywords: zoology, faunistics, primary forest, Slovenia
Published in DiRROS: 16.07.2024; Views: 317; Downloads: 158
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Premalignant gastric lesions in patients included in National colorectal cancer screening
Bojan Tepeš, Maja Šeruga, Miroslav Vujasinović, Dejan Urlep, Liljana Ljepovic, Nataša Brglez Jurecic, Alenka Forte, Anita Kek-Ljubec, Miha Skvarč, 2018, original scientific article

Abstract: Background. Gastric cancer is the fifth most common malignancy in the world with almost one million new cases annually. Helicobacter pylori infection causes 89% of all gastric cancers. Premalignant lesions (atrophy and intestinal metaplasia) develop after several decades of inflammation. Secondary prevention with gastroscopy is possible, but it is costly and has a low compliance rate. Alternative procedures like serology testing for pepsinogen I and II and pepsinogen I/II ratio are available to select patients for surveillance gastroscopies. Patients and methods. In seven outpatient endoscopic units, 288 patients (154 men; 53.5%), average age 60.68 years, tested positive in National colorectal cancer screening programme SVIT, were included in the study. Gastropanel (BioHit, Finland) was used as a serologic biopsy method. Results. We found 24 patients (12 men, mean age 63.7 years) with pepsinogen (pepsinogen I/II < 3 and/or pepsinogen I < 30 %g/L). Premalignant changes were found on gastric biopsies in 21 patients (7.3% incidence). Operative Link on Gastric Intestinal Metaplasia Assessment (OLGIM) % 1 was found in 20 patients; Operative Link for Gastritis Assessment (OLGA) % 1 was found in 19 patients. Combined accuracy for preneoplastic lesions in Gastropanel positive patients was 87.5%. H. pylori seropositivity was found in 219 patients (76%). Only 24% of our population had normal results. Conclusions. Gastropanel test has proven to be a reliable non-invasive test for advanced gastric preneoplastic lesions that can select patients for further gastroscopy. We found high H. pylori seropositivity in older age groups in Slovenia.
Keywords: Helicobacter pylori, gastropanel, atrophy, Slovenia, intestinal metaplasia, gastric cancer, SVIT
Published in DiRROS: 02.07.2024; Views: 374; Downloads: 115
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17.
The need for innovations to secure the future of artisanal mussel farming in the coastal sea of the Gulf of Trieste (Slovenia)
Andreja Ramšak, Tine Bizjak, Uroš Robič, Manca Kovač Viršek, 2024, original scientific article

Abstract: Mariculture along the Slovene coastline is mainly mussel culture operated as a family business; in one case, it is combined with sea bass farming. It started in the early 70 s with cultivation of Mediterranean mussels, while today, the two largest producers incorporate the cultivation of Venus clams and oysters as species with higher economic value on the market. Currently, all mussels and clams produced in Slovenia are sold in the Slovenian, Italian, Croatian and French markets. The production of Mediterranean mussels (Mytilus galloprovincialis) has increased steadily, with the main obstacles being a limited area for cultivation, occasional harmful algal blooms, predation by gilthead seabream and flatworms. In addition, more recent summer heatwaves negatively affected mussel production when seawater reached high temperatures at the thermal limits unsuitable for mussel growth. This study aimed to collect first-hand information about the current mussel production technology, processes and needs to identify opportunities for innovations that could benefit the entire sector (increased knowledge, production yield, reduced workload and effort with administrative issues). The study was based on a semi-structured questionnaire with the owners of mussel farms. Analysis of the questionnaire was supplemented with current knowledge from the field and provided comprehensive insight into a small sector of mussel farming along the Slovenian coast and its possible development in the future.
Keywords: mussel farming, Mediterranean mussel, aquaculture, socio-economic impact, Gulf of Trieste, Slovenia
Published in DiRROS: 03.06.2024; Views: 448; Downloads: 355
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18.
Evolution of RMA in Slovenia
Primož Petek, Tjaša Baloh, Vanda Baloh, 2024, independent scientific component part or a chapter in a monograph

Abstract: This chapter outlines the research management and administration (RMA) as a profession and work field in Slovenia. Thus, we present an overview of the Slovenian research system, describing how this system has evolved over time. In addition, we explain the emerging need for RMA skills, including its self-organisation component and the challenges that lie ahead. A section is dedicated to Slovenian RMA demographics using RAAAP-2 and RAAAP-3 surveys. The conclusions of the chapter focus on a forecast for the future of RMA in Slovenia and several possible paths to follow for its community.
Keywords: Slovenia, research management and administration, professionalisation, KOsRIS II, RAAAP, research ecosystem
Published in DiRROS: 30.04.2024; Views: 589; Downloads: 246
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19.
Towards the development of a landslide activity map in Slovenia
Mateja Jemec Auflič, Krištof Oštir, Tanja Grabrijan, Matjaž Ivačič, Tina Peternel, Ela Šegina, 2024, original scientific article

Abstract: To create the landslide activity map, we implemented and tested the procedure to fully utilise the 6-day repeatability of the Sentinel-1 constellation in three pilot areas in Slovenia for the observation period from 2017 to 2021. The interferometric processing of the Sentinel-1 images was carried out with ENVI SARScape, while the interpretation of the persistent scatterers InSAR data was done in three steps. In the first step, a preliminary interpretation of the landslide areas was performed by integrating the PS InSAR data into a GIS environment with information that could be relevant to explain the movement patterns of the PS InSAR points. In the second step, a field validation was performed to check the PS InSAR in the field and record the potential damage to the objects indicating the slope mass movements. In the third step, the deformations were identified, and areas of significant movement were determined, consisting of clusters of at least 3 persistent scatterers (PS) with a maximum spacing of 10 m. The landslide activity map was created based on the landslide areas categorised into four classes based on the geotechnical analyses, yearly velocity data obtained by PS InSAR, and validation of annual velocity data obtained by in-situ and GNSS monitoring and field observation. A total of 21 polygons with different landslide activities were identified in three study areas. The overall methodology will help stakeholders in the early mapping and monitoring of landslides to increase the urban resilience.
Keywords: landslides, EO data, sentinel, time series, methodology, Slovenia
Published in DiRROS: 30.04.2024; Views: 515; Downloads: 298
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20.
Habitat degradation facilitates the invasion of Neophytes : a resurvey study based on permanent vegetation plots in oak forests in Slovenia (Europe)
Janez Kermavnar, Lado Kutnar, 2024, original scientific article

Abstract: The spread of neophytes (non-native plant species) challenges the conservation status and ecological integrity of forests, especially in lowland areas. Long-term resurvey studies are needed to evaluate the temporal dynamics of neophytes in forests; however, such data are scarce. In 2023, we resampled a set of 45 permanent vegetation plots (established in 1992/93) in two forest vegetation types: oak–hornbeam forests dominated by Quercus robur and colline oak–beech forests dominated by Q. petraea. Over the last 30 years, oak forests have experienced extensive oak tree mortality, with the degree of habitat degradation being greater in Q. robur forests. In the early 1990s, only three neophytes with low abundance were recorded across all plots. In the 2023 resurvey, the total number of neophytes increased to 22 species (15 herbaceous and 7 woody species), comprising 6.9% of the total species pool in the understory layer. The increase in the plot-level number and cover of neophytes was significant in plots dominated by Q. robur but not in those with Q. petraea. The most frequent neophytes were Impatiens parviflora (present in 31% of plots), Solidago gigantea (27%), Erigeron annuus (16%) and Erechtites hieraciifolia (16%). The richness and cover of neophytes were significantly affected by the tree layer cover (negative correlation) and the degree of soil disturbance (positive correlation). All neophytes established in disturbed patches, whereas the occurrence of I. parviflora was exceptional as it was able to colonize less degraded, shaded understory environments. Habitat degradation (the mortality-induced loss of stand-forming oak trees resulting in extensive tree layer cover decrease) emerged as a key driver promoting neophyte proliferation, coupled with the impact of management-induced disturbances affecting overstory and soil conditions. The spread is expected to continue or even intensify in the future because novel light regimes and disturbances make forest habitats less resistant to neophyte proliferation.
Keywords: long-term vegetation change, invasive non-native plants, oak mortality, Quercus robur, Quercus petraea, canopy openness, Impatiens parviflora, Slovenia
Published in DiRROS: 19.04.2024; Views: 483; Downloads: 322
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