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Query: "author" (Matjaž Gregorič) .

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1.
ERGA-BGE reference genome of Leviellus thorelli, a common orb-weaving spider representing the Zygiellidae family
Matjaž Gregorič, Elena Bužan, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi, 2026, other scientific articles

Abstract: The Leviellus thorelli reference genome provides the first high-quality genomic resource for Zygiellidae, a family of orb-weaving spiders with a dynamic systematic history and distinct for constructing webs with a characteristic spiral-free sector. As part of the European Reference Genome Atlas (ERGA), we generated a chromosome-level assembly for L. thorelli that is organized into 13 contiguous chromosomal pseudomolecules. This chromosome-level assembly encompasses 2.20 Gb and is composed of 939 contigs and 130 scaffolds, with contig and scaffold N50 values of 5.4 Mb and 167.1 Mb, respectively. This genome represents a valuable addition to the growing collection of spider genomes. With Zygiellidae now included among the available genomes of true orb-weavers, this is a key resource for comparative studies into the genomic basis of orb web and silk evolution.
Published in DiRROS: 24.03.2026; Views: 138; Downloads: 113
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2.
Osmooka, a new spider genus from Madagascar: a surprising relative of the Australian fauna (Araneae: Paraplectanoididae)
Matjaž Kuntner, Kuang-Ping Yu, Matjaž Bedjanič, Matjaž Gregorič, Eva Turk, Klemen Čandek, Jonathan A. Coddington, Ingi Agnarsson, James Starrett, Jason E. Bond, 2025, complete scientific database of research data

Abstract: Madagascar is a biodiversity hotspot with high endemism and ancient phylogenetic diversity. We here report the discovery of Osmooka aphana gen. nov., sp. nov. from Marojejy National Park. Phylogenomic analyses place Osmooka as sister to the Australian Paraplectanoides Keyserling, 1886, and this doublet is sister to Nephilidae Simon, 1894. When proposed, Paraplectanoididae Kuntner, Coddington, Agnarsson & Bond, 2023 was exclusively Australian and monogeneric, but was predicted to contain additional, undescribed taxa. The discovery of Osmooka and its phylogenetic placement in Paraplectanoididae supports this prediction. We present a taxonomic treatment of Osmooka and Paraplectanoides, and a reappraisal of Orbipurae morphological homologies. With this new discovery, we revalidate Paraplectanoididae, Nephilidae, and Phonognathidae Simon, 1894, ranks resurrected as exclusive, monophyletic, and well-diagnosed families, whereas Araneidae Clerck, 1757 requires further redefinition. Finally, we test the hypothesis of East Gondwanan vicariant origin of Osmooka and Paraplectanoides. This scenario would predict an ancient age of their ancestor, predating the 130 Ma breakup of Gondwana. Divergence dating refutes this hypothesis by estimating their common ancestor at 57 Ma. Rather than through vicariance, the disjunct distribution of Osmooka and Paraplectanoides is best explained through Cenozoic intercontinental dispersal and/or extinctions. Potential discovery of additional paraplectanoidid diversity might better elucidate the timing, modes, and trajectories of historic dispersal and extinction events.
Keywords: Madagascar, biodiversity, Osmooka aphana gen. nov., sp. nov., Paraplectanoididae, spiders
Published in DiRROS: 23.03.2026; Views: 123; Downloads: 101
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3.
The Other Side of the Coin: Taxonomic Updates and Species Key of Herennia (Araneae: Nephilidae)
Matjaž Kuntner, Kuang-Ping Yu, Eva Turk, Klemen Čandek, Matjaž Gregorič, Gregory J. Anderson, Jonathan A. Coddington, Ren-Chung Cheng, 2026, original scientific article

Abstract: Coin spiders of the genus Herennia Thorell, 1877 are species-rich nephilids distributed across South, East, and Southeast Asia and Australasia. They are notable for ladder-shaped arboricolous webs, extreme sexual size dimorphism, and complex sexual behaviors. The most recent revision recognized 11 species, only 4 of which were described from both sexes. Here, we present a taxonomic revision integrating new morphological and molecular data and recognize 14 species. We describe three new species—H. eva Kuntner from Sulawesi, H. maj Kuntner from Vietnam, and H. tsoi Kuntner et al. from Taiwan—and document previously unknown males of H. oz Kuntner, 2005 from Australia and H. tone Kuntner, 2005 from the Philippines. We also extend the known distribution of H. papuana Thorell, 1881 from New Guinea to Australia. Although several molecular species-delimitation analyses suggest H. oz and H. etruscilla Kuntner, 2005 may be conspecific, consistent and diagnostic morphological differences support their recognition as distinct species. We provide an updated identification key to all valid Herennia species. Additional undescribed endemics are likely to occur across the Asian mainland and the rapidly disappearing forests of Southeast Asian and Australasian islands. The genus’ biogeographic pattern, shaped by an ancestrally broad distribution spanning the Wallace Line, may reflect repeated loss and regain of ballooning, a hypothesis that warrants experimental and comparative testing.
Keywords: orbweb spiders, Araneoidea, taxonomy, Wallace Line, biogeography, vicariance
Published in DiRROS: 16.03.2026; Views: 202; Downloads: 124
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4.
Osmooka, a new spider genus from Madagascar : a surprising relative of the Australian fauna (Araneae: Paraplectanoididae)
Matjaž Kuntner, Kuang-Ping Yu, Matjaž Bedjanič, Matjaž Gregorič, Eva Turk, Klemen Čandek, Jonathan A. Coddington, Ingi Agnarsson, James Starrett, Jason E. Bond, 2025, original scientific article

Abstract: Madagascar is a biodiversity hotspot with high endemism and ancient phylogenetic diversity. We here report the discovery of Osmooka aphana gen. nov., sp. nov. from Marojejy National Park. Phylogenomic analyses place Osmooka as sister to the Australian Paraplectanoides Keyserling, 1886 and this doublet is sister to Nephilidae Simon, 1894. When proposed, Paraplectanoididae Kuntner, Coddington, Agnarsson & Bond, 2023 was exclusively Australian and monogeneric, but was predicted to contain additional, undescribed taxa. The discovery of Osmooka and its phylogenetic placement in Paraplectanoididae support this prediction. We present a taxonomic treatment of Osmooka and Paraplectanoides, and a reappraisal of Orbipurae morphological homologies. With this new discovery, we revalidate Paraplectanoididae, Nephilidae, and Phonognathidae Simon, 1894 ranks resurrected as exclusive, monophyletic, and well-diagnosed families, whereas Araneidae Clerck, 1757 requires further redefinition. Finally, we test the hypothesis of East Gondwanan vicariant origin of Osmooka and Paraplectanoides. This scenario would predict an ancient age of their ancestor, predating the 130 Ma breakup of Gondwana. Divergence dating refutes this hypothesis by estimating their common ancestor at 57 Ma. Rather than through vicariance, the disjunct distribution of Osmooka and Paraplectanoides is best explained through Cenozoic intercontinental dispersal and/or extinctions. Potential discovery of additional paraplectanoidid diversity might better elucidate the timing, modes, and trajectories of historic dispersal and extinction events.
Keywords: phylogenomics, classification, palpal homology, arachnology, zoology
Published in DiRROS: 22.01.2026; Views: 369; Downloads: 280
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5.
Taxonomy, phylogeny, and size evolution in the spider genus Megaraneus Lawrence, 1968 (Araneae: Araneidae)
Klemen Čandek, Eva Turk, Pedro de Souza Castanheira, Kuang-Ping Yu, Matjaž Gregorič, Volker W. Framenau, Ingi Agnarsson, Matjaž Kuntner, 2025, original scientific article

Abstract: Among terrestrial animals, spiders exhibit the most striking examples of sexual size dimorphism (SSD) but better understanding of its evolution requires improved taxonomy and phylogeny. Many sexually dimorphic spiders lack adequate description, phylogenetic placement, and natural history observations. In South Africa, we documented the natural history of a poorly known spider, Megaraneus gabonensis (Lucas, 1858), with extreme, female-biased SSD (eSSD, female:male approximately 4:1). Here, we redescribe M. gabonensis, place Megaraneus Lawrence, 1968 phylogenetically for the first time, assess whether the observed eSSD represents an independent evolutionary origin, and test whether the macroevolutionary pattern is better explained by male dwarfism or female gigantism. The recovered phylogenetic placement of Megaraneus in the araneid ‘backobourkiines’, a clade previously considered as restricted to East Asia and Australasia, extends the range of this clade to the Afrotropics. We find that eSSD was present in the common ancestor of the ‘backobourkiines’, with further increases in female body length occurring independently in Megaraneus, Backobourkia Framenau, Dupérré, Blackledge & Vink, 2010, and the currently misplaced Parawixia dehaani (Doleschall, 1859). We conclude that the evolution of eSSD reflects a complex pattern of sex-specific size changes across spider phylogeny, but that in Megaraneus it results from female gigantism.
Keywords: sexual size dimorphism, backobourkiines, trait evolution, South Africa
Published in DiRROS: 30.09.2025; Views: 566; Downloads: 257
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6.
Golden orbweavers ignore biological rules : phylogenomic and comparative analyses unravel a complex evolution of sexual size dimorphism
Matjaž Kuntner, Christopher A. Hamilton, Ren-Chung Cheng, Matjaž Gregorič, Nik Lupše, Tjaša Lokovšek, Emily Moriarty Lemmon, Alan R. Lemmon, Ingi Agnarsson, Jonathan A. Coddington, Jason E. Bond, 2019, original scientific article

Abstract: Instances of sexual size dimorphism (SSD) provide the context for rigorous tests of biological rules of size evolution, such as Cope’s rule (phyletic size increase), Rensch’s rule (allometric patterns of male and female size), as well as male and female body size optima. In certain spider groups, such as the golden orbweavers (Nephilidae), extreme female-biased SSD (eSSD, female:male body length 2) is the norm. Nephilid genera construct webs of exaggerated proportions, which can be aerial, arboricolous, or intermediate (hybrid). First, we established the backbone phylogeny of Nephilidae using 367 anchored hybrid enrichment markers, then combined these data with classical markers for a reference species-level phylogeny. Second, we used the phylogeny to test Cope and Rensch’s rules, sex specific size optima, and the coevolution of web size, type, and features with female and male body size and their ratio, SSD. Male, but not female, size increases significantly over time, and refutes Cope’s rule. Allometric analyses reject the converse, Rensch’s rule. Male and female body sizes are uncorrelated. Female size evolution is random, but males evolve toward an optimum size (3.2–4.9 mm). Overall, female body size correlates positively with absolute web size. However, intermediate sized females build the largest webs (of the hybrid type), giant female Nephila and Trichonephila build smaller webs (of the aerial type), and the smallest females build the smallest webs (of the arboricolous type). We propose taxonomic changes based on the criteria of clade age, monophyly and exclusivity, classification information content, and diagnosability. Spider families, as currently defined, tend to be between 37 million years old and 98 million years old, and Nephilidae is estimated at 133 Ma (97–146), thus deserving family status. We, therefore, resurrect the family Nephilidae Simon 1894 that contains Clitaetra Simon 1889, the Cretaceous GeratonephilaPoinar and Buckley (2012), Herennia Thorell 1877, IndoetraKuntner 2006, new rank, Nephila Leach 1815, Nephilengys L. Koch 1872, Nephilingis Kuntner 2013, Palaeonephila Wunderlich 2004 from Tertiary Baltic amber, and TrichonephilaDahl 1911, new rank. We propose the new clade Orbipurae to contain Araneidae Clerck 1757, Phonognathidae Simon 1894, new rank, and Nephilidae. Nephilid female gigantism is a phylogenetically ancient phenotype (over 100 Ma), as is eSSD, though their magnitudes vary by lineage.
Keywords: spiders, evolution of sexual size dimorphism, golden orbweavers, analyses
Published in DiRROS: 24.07.2024; Views: 1574; Downloads: 849
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7.
The transcriptome of Darwinʼs bark spider silk glands predicts proteins contributing to dragline silk toughness
Jessica E. Garb, Robert A. Haney, Evelyn E. Schwager, Matjaž Gregorič, Matjaž Kuntner, Ingi Agnarsson, Todd A. Blackledge, 2019, original scientific article

Abstract: Darwin’s bark spider (Caerostris darwini) produces giant orb webs from dragline silk that can be twice as tough as other silks, making it the toughest biological material. This extreme toughness comes from increased extensibility relative to other draglines. We show C. darwini dragline-producing major ampullate (MA) glands highly express a novel silk gene transcript (MaSp4) encoding a protein that diverges markedly from closely related proteins and contains abundant proline, known to confer silk extensibility, in a unique GPGPQ amino acid motif. This suggests C. darwini evolved distinct proteins that may have increased its dragline’s toughness, enabling giant webs. Caerostris darwini’s MA spinning ducts also appear unusually long, potentially facilitating alignment of silk proteins into extremely tough fibers. Thus, a suite of novel traits from the level of genes to spinning physiology to silk biomechanics are associated with the unique ecology of Darwin’s bark spider, presenting innovative designs for engineering biomaterials.
Keywords: spiders
Published in DiRROS: 23.07.2024; Views: 1035; Downloads: 653
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8.
Increasing information content and diagnosability in family-level classifications
Matjaž Kuntner, Klemen Čandek, Matjaž Gregorič, Eva Turk, A. Chris Hamilton, Lisa Chamberland, James Starrett, Ren-Chung Cheng, Jonathan A. Coddington, Ingi Agnarsson, Jason E. Bond, 2023, original scientific article

Abstract: Higher-level classifications often must account for monotypic taxa representing depauperate evolutionary lineages and lacking synapomorphies of their better-known, well-defined sister clades. In a ranked (Linnean) or unranked (phylogenetic) classification system, discovering such a depauperate taxon does not necessarily invalidate the rank classification of sister clades. Named higher taxa must be monophyletic to be phylogenetically valid. Ranked taxa above the species level should also maximize information content, diagnosability, and utility (e.g., in biodiversity conservation). In spider classification, families are the highest rank that is systematically catalogued, and incertae sedis is not allowed. Consequently, it is important that family level taxa be well defined and informative. We revisit the classification problem of Orbipurae, an unranked suprafamilial clade containing the spider families Nephilidae, Phonognathidae, and Araneidae sensu stricto. We argue that, to maximize diagnosability, information content, conservation utility, and practical taxonomic considerations, this “splitting” scheme is superior to its recently proposed alternative, which lumps these families together as Araneidae sensu lato. We propose to redefine Araneidae and recognize a monogeneric spider family, Paraplectanoididae fam. nov. to accommodate the depauperate lineage Paraplectanoides. We present new subgenomic data to stabilize Orbipurae topology which also supports our proposed family-level classification. Our example from spiders demonstrates why classifications must be able to accommodate depauperate evolutionary lineages, e.g., Paraplectanoides. Finally, although clade age should not be a criterion to determine rank, other things being equal, comparable ages of similarly ranked taxa do benefit comparative biology.
Keywords: classification, family rank, phylogenomics, systematics, monophyly, spider phylogeny, zoology
Published in DiRROS: 12.07.2024; Views: 1422; Downloads: 942
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