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Query: "author" (Juan A Lopez-Raez) .

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1.
Vibrational signal types recorded in two grassland habitats : version v1
Juan José López Díez, Rok Šturm, Jernej Polajnar, Meta Virant-Doberlet, 2025, research data

Abstract: A dataset accompanying the publication López Díez J.J. et al. (2025): Spatial and temporal variation in vibroscape composition in two grassland habitats. Scientific Reports 15: 21910, https://doi.org/10.1101/2024.07.03.601657[.] Contains audio clips of identified Vibrational Signal Types (VSTs) extracted from vibroscape recordings made in Bistra (Central Slovenia) and Krkavče (SW Slovenia). Original vibroscape recordings from which the VSTs were extracted are available on request from the authors.
Keywords: biotremology, ecotremology, vibroscape, vibrational environments, vibrational comunications, vibrational communities, data
Published in DiRROS: 27.10.2025; Views: 847; Downloads: 720
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2.
Spatial and temporal variation in vibroscape composition in two grassland habitats
Juan José López Díez, Rok Šturm, Jernej Polajnar, Meta Virant-Doberlet, 2025, original scientific article

Abstract: Substrate-borne vibrational signaling is one of the oldest and taxonomically widespread forms of animal communication. For many animals the natural vibrational environment (vibroscape) is an essential source of information underlying their behavioral decisions; however, the structure and dynamics of vibroscape composition of the natural habitats are largely unexplored. We studied vibroscape composition in a eutrophic lowland hay meadow and a sub-Mediterranean dry karst grassland. The results obtained by simultaneous, multi-channel recordings showed that vibroscape composition changes throughout the day and from day to day, differs between plant species, depends on the spatial position of the plant within the habitat and is also influenced by environmental parameters. The results highlight the unpredictability and high variability of the vibrational environment encountered by plant-dwelling insects, and the complexity in implementing biodiversity monitoring based on vibroscape composition.
Keywords: biotremology, ecotremology, vibroscape, vibrational communication, vibrational community, environmental factors, zoology, ecology
Published in DiRROS: 02.07.2025; Views: 1057; Downloads: 962
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3.
Ethylene signaling is essential for mycorrhiza-induced resistance against chewing herbivores in tomato
Javier Lidoy, Javier Rivero, Živa Ramšak, Marko Petek, Maja Križnik, Victor Flors, Juan A Lopez-Raez, Ainhoa Martinez-Medina, Kristina Gruden, Maria J Pozo, 2025, original scientific article

Abstract: Arbuscular mycorrhizal (AM) symbiosis can prime plant defenses, leading to mycorrhiza-induced resistance (MIR) against different attackers, including insect herbivores. Still, our knowledge of the complex molecular regulation leading to MIR is very limited. Here, we showed that the AM fungus Funneliformis mosseae protects tomato plants against two different chewing herbivores, Spodoptera exigua and Manduca sexta. We explored the underlying molecular mechanism through genome-wide transcriptional profiling, bioinformatics network analyses, and functional bioassays. Herbivore-triggered jasmonate (JA)-regulated defenses were primed in leaves of mycorrhizal plants. Likewise, ethylene (ET) biosynthesis and signaling were also higher in leaves of mycorrhizal plants both before and after herbivory. We hypothesized that fine-tuned ET signaling is required for the primed defense response leading to MIR. ET is a complex regulator of plant responses to stress and is generally considered a negative regulator of plant defenses against herbivory. However, ET-deficient or insensitive lines did not show AM-primed JA biosynthesis or defense response, and were unable to develop MIR against any of the herbivores. Thus, we demonstrate that hormone crosstalk is central to the priming of plant immunity by beneficial microbes, with ET fine-tuning being essential for the primed JA biosynthesis and boosted defenses leading to MIR in tomato.
Keywords: chewing herbivores, defense priming, ethylene, hormonal crosstalk, jasmonate, mycorrhiza-induced resistance (MIR)
Published in DiRROS: 10.04.2025; Views: 1313; Downloads: 1351
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4.
Computational methods for detecting insect vibrational signals in field vibroscape recordings
Matija Marolt, Matevž Pesek, Rok Šturm, Juan José López Díez, Behare Rexhepi, Meta Virant-Doberlet, 2025, original scientific article

Abstract: The ecological significance of vibroscape has been largely overlooked, excluding an important part of the available information from ecosystem assessment. Insects rely primarily on substrate-borne vibrational signalling in their communication, which is why the majority of terrestrial insects are excluded from passive acoustic monitoring. The ability to monitor the biological component of the natural vibroscape has been limited due to a lack of data and methods to analyse the data. In this paper, we evaluate the use of deep learning models to automatically detect and classify vibrational signals from field recordings obtained with laser vibrometry. We created a dataset of annotated vibroscape recordings of meadow habitats, containing vibrational signals categorized as pulses, harmonic signals, pulse trains, and complex signals. We compared different deep neural network architectures for the detection and classification of vibrational signals, including convolutional and transformer models. The PaSST transformer architecture, which was fine-tuned from a pre-trained checkpoint demonstrated the highest performance on all tasks, achieving an average precision of 0.79 in signal detection. For signals with more than one hour of annotated data, the classification models achieved instance-based F1-scores above 0.8, enabling automatic analysis of activity patterns. In our case study, where 24-hour field recordings were analysed, the trained models (even those with lower precision) revealed interesting activity patterns of different species. The presented study, together with the dataset we publish with this paper, lays the foundation for further analysis of the vibroscape and the development of automated methods for ecotremological monitoring that complement passive acoustic monitoring and provide a comprehensive approach to ecosystem assessment.
Keywords: vibroscape, ecotremology, deep learning, automatic classification, biotremology, insects, zoology, laser vibrometry, ecosystem assessment
Published in DiRROS: 21.01.2025; Views: 1059; Downloads: 626
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5.
Hay meadow vibroscape and interactions within insect vibrational community
Rok Šturm, Behare Rexhepi, Juan José López Díez, Andrej Blejec, Jernej Polajnar, Jérôme Sueur, Meta Virant-Doberlet, 2021, original scientific article

Abstract: Our experiences shape our knowledge and understanding of the world around us. The natural vibrational environment (vibroscape) is hidden to human senses but is nevertheless perceived and exploited by the majority of animals. Here, we show that the vibroscape recorded on plants in a temperate hay meadow is a dynamic low-frequency world, rich in species-specific vibrational signals. The overall vibroscape composition changed throughout the season and also depended on the plant species, as well as on the spatial position of individual plants within the meadow. Within the studied community, vibrationally signaling species sharing this communication channel avoided interference primarily by partitioning vibrational space on a fine temporal scale. The vibroscape is a reliable source of information in the environment and expands our understanding of ecological and evolutionary processes.
Published in DiRROS: 19.07.2024; Views: 1778; Downloads: 792
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6.
Is it time for ecotremology?
Rok Šturm, Juan José López Díez, Jernej Polajnar, Jérôme Sueur, Meta Virant-Doberlet, 2022, original scientific article

Abstract: Our awareness of air-borne sounds in natural and urban habitats has led to the recent recognition of soundscape ecology and ecoacoustics as interdisciplinary fields of research that can help us better understand ecological processes and ecosystem dynamics. Because the vibroscape (i.e., the substrate-borne vibrations occurring in a given environment) is hidden to the human senses, we have largely overlooked its ecological significance. Substrate vibrations provide information crucial to the reproduction and survival of most animals, especially arthropods, which are essential to ecosystem functioning. Thus, vibroscape is an important component of the environment perceived by the majority of animals. Nowadays, when the environment is rapidly changing due to human activities, climate change, and invasive species, this hidden vibratory world is also likely to change without our notice, with potentially crucial effects on arthropod communities. Here, we introduce ecotremology, a discipline that mainly aims at studying substrate-borne vibrations for unraveling ecological processes and biological conservation. As biotremology follows the main research concepts of bioacoustics, ecotremology is consistent with the paradigms of ecoacoustics. We argue that information extracted from substrate vibrations present in the environment can be used to comprehensively assess and reliably predict ecosystem changes. We identify key research questions and discuss the technical challenges associated with ecotremology studies.
Keywords: ecotremology, monitoring, hidden biodiversity, vibroscape, vibrational communication
Published in DiRROS: 16.07.2024; Views: 2274; Downloads: 846
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