1. Metadata from: Functionality of potato virus Y coat protein in cell-to-cell movement dynamics is defined by its N-terminal regionAnže Vozelj, Tjaša Mahkovec Povalej, Katja Stare, Magda Tušek-Žnidarič, Katarina Bačnik, Valentina Levak, Ion Gutiérrez-Aguirre, Marjetka Podobnik, Kristina Gruden, Anna Coll Rius, Tjaša Lukan, 2025, complete scientific database of research data Keywords: potato virus Y, coat protein, viral movement, point mutations, Solanum tuberosum Published in DiRROS: 31.03.2026; Views: 393; Downloads: 419
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2. Identification and cultivation of biotechnologically relevant microalgal and cyanobacterial species isolated from Sečovlje salt pans, SloveniaEylem Atak, Petra Tavčar Verdev, Marko Petek, Anna Coll Rius, Daniel Bosch, Marko Dolinar, Viktoriia Komarysta, Neli Glavaš, Ana Rotter, 2026, original scientific article Keywords: culture conditions, halophilic organisms, hypersaline environment, identification of microorganisms, shotgun metagenomics, photosynthetic microorganisms Published in DiRROS: 28.01.2026; Views: 570; Downloads: 432
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3. Functionality of potato virus Y coat protein in cell-to-cell movement dynamics is defined by its N-terminal regionAnže Vozelj, Tjaša Mahkovec Povalej, Katja Stare, Magda Tušek-Žnidarič, Katarina Bačnik, Valentina Levak, Ion Gutiérrez-Aguirre, Marjetka Podobnik, Kristina Gruden, Anna Coll Rius, Tjaša Lukan, 2025, original scientific article Abstract: Potato virus Y (PVY) is one of the top 10 economically most important plant viruses and responsible for major yield losses. We previously suggested the involvement of the N-terminal region of PVY coat protein (CP) in PVY spread. By constructing different N-terminal deletion mutants of the PVY N605 strain, we here show that deletions of 40 or more amino acid residues from the N-terminal region of the CP resulted in the PVY multiplication limited to primary infected cells in Nicotiana clevelandii plants. Deletion of 26 residues profoundly impaired PVY cell-to-cell movement and prevented systemic PVY spread, while deletions of 19-23 residues allowed delayed systemic PVY spread. Introduced point mutations in the identified region prevent (S21G) or delay (G20P) PVY movement. In summary, this work shows the significance of the CP N-terminus for movement of the PVY. Keywords: potato virus Y, potato, coat proteins, viral movement, point mutations Published in DiRROS: 18.12.2025; Views: 1183; Downloads: 581
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5. Protein complexes from edible mushrooms as a sustainable potato protection against coleopteran pestsKarmen Pogačar, Maja Grundner, Primož Žigon, Anna Coll Rius, Anastasija Panevska, Tjaša Lukan, Marko Petek, Jaka Razinger, Kristina Gruden, Kristina Sepčić, 2024, original scientific article Keywords: biopesticides, Leptinotarsa decemlineata, Solanum tuberosum, insect stress response, larval toxicity, transgenic crop Published in DiRROS: 14.05.2025; Views: 1160; Downloads: 700
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6. Protein complexes from edible mushrooms as a sustainable potato protection against coleopteran pestsKarmen Pogačar, Maja Grundner, Primož Žigon, Anna Coll Rius, Anastasija Panevska, Tjaša Lukan, Marko Petek, Jaka Razinger, Kristina Gruden, Kristina Sepčić, 2024, original scientific article Keywords: biopesticides, Leptinotarsa decemlineata, Solanum tuberosum, insect stress response, larval toxicity, transgenic crop Published in DiRROS: 30.01.2025; Views: 988; Downloads: 883
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7. The StPti5 ethylene response factor acts as a susceptibility factorby negatively regulating the potato immune responseto pathogensAnna Coll Rius, Tjaša Lukan, Katja Stare, Maja Zagorščak, Tjaša Mahkovec Povalej, Špela Baebler, Salomé Prat, Núria Sánchez Coll, Marc Valls, Marko Petek, Kristina Gruden, 2024, original scientific article Abstract: Ethylene response factors (ERFs) have been associated with biotic stress in Arabidopsis, while their function in non-model plants is still poorly understood. Here we investigated the role of potato ERF StPti5 in plant immunity.
We show that StPti5 acts as a susceptibility factor. It negatively regulates potato immunity against potato virus Y and Ralstonia solanacearum, pathogens with completely different modes of action, and thereby has a different role than its orthologue in tomato. Remarkably, StPti5 is destabilised in healthy plants via the autophagy pathway and accumulates exclusively in the nucleus upon infection. We demonstrate that StEIN3 and StEIL1 directly bind the StPti5 promoter and activate its expression, while synergistic activity of the ethylene and salicylic acid pathways is required for regulated StPti expression.
To gain further insight into the mode of StPti5 action in attenuating potato defence responses, we investigated transcriptional changes in salicylic acid deficient potato lines with silenced StPti5 expression. We show that StPti5 regulates the expression of other ERFs and downregulates the ubiquitin-proteasome pathway as well as several proteases involved in directed proteolysis.
This study adds a novel element to the complex puzzle of immune regulation, by deciphering a two-level regulation of ERF transcription factor activity in response to pathogens. Keywords: ethylene response factor, immune signalling, potato virus Y, Pti5, Ralstonia solanacearum, Solanum tuberosum, susceptibility factor Published in DiRROS: 29.08.2024; Views: 1576; Downloads: 1447
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8. Editorial : Women in plant pathogen interactions:Špela Baebler, Anna Coll Rius, Giulia Malacarne, 2023, other scientific articles Abstract: Plants are continuously exposed to different pathogens and pests which can lead to devastating effects on agricultural production. A better understanding of plant defence response against pathogens is crucial to provide means for novel crop breeding strategies and environmentally friendly plant protection and disease management approaches. In this Research Topic, we aimed to highlight the diversity of research performed across the entire breadth of the plant-pathogen interactions field. It thus includes the most recent scientific advances in understanding the molecular, cellular, and biochemical mechanisms of plant response to bacteria, fungi, and viruses with applications to compelling problems. In the Research Topic, six research papers (one about plant-bacterial interaction, three about plant-fungal interactions, and two about plant-virus interaction) and a review were published and are outlined below. Keywords: plant pathogen, plant diseases, bacteria, fungi, viruses, beneficial microbes, plant-pathogen interaction, plant protection Published in DiRROS: 06.08.2024; Views: 2200; Downloads: 958
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9. Plant molecular responses to potato virus Y : a continuum of outcomes from sensitivity and tolerance to resistanceŠpela Baebler, Anna Coll Rius, Kristina Gruden, 2020, review article Abstract: Potato virus Y (PVY) is the most economically important virus affecting potato production. PVY manipulates the plant cell machinery in order to successfully complete the infecting cycle. On the other side, the plant activates a sophisticated multilayer immune defense response to combat viral infection. The balance between these mechanisms, depending on the plant genotype and environment, results in a specific outcome that can be resistance, sensitivity, or tolerance. In this review, we summarize and compare the current knowledge on molecular events, leading to different phenotypic outcomes in response to PVY and try to link them with the known molecular mechanisms. Keywords: potato virus Y, Potyviridae, potato, Solanum tuberosum, Solanaceae, plant immune signaling, plant hormones, tolerance, susceptibility, resistance Published in DiRROS: 06.08.2024; Views: 2462; Downloads: 1481
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10. TGA transcription factors : structural characteristics as basis for functional variabilityŠpela Tomaž, Kristina Gruden, Anna Coll Rius, 2022, review article Abstract: TGA transcription factors are essential regulators of various cellular processes, their activity connected to different hormonal pathways, interacting proteins and regulatory elements. Belonging to the basic region leucine zipper (bZIP) family, TGAs operate by binding to their target DNA sequence as dimers through a conserved bZIP domain. Despite sharing the core DNA-binding sequence, the TGA paralogues exert somewhat different DNA-binding preferences. Sequence variability of their N- and C-terminal protein parts indicates their importance in defining TGA functional specificity through interactions with diverse proteins, affecting their DNA-binding properties. In this review, we provide a short and concise summary on plant TGA transcription factors from a structural point of view, including the relation of their structural characteristics to their functional roles in transcription regulation. Keywords: DOG1 domain, functional variability, intrinsically disordered regions, plant transcription regulation, post-translational modifications, structural characteristics, TGA transcription factors Published in DiRROS: 05.08.2024; Views: 1802; Downloads: 1368
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