20.500.12556/DiRROS-27743 White paper: standards for handling and analyzing plant pan-genomes Plant pan-genomes, which aggregate genomic sequences and annotations from multiple individuals of a species, have emerged as transformative tools for understanding genetic diversity, adaptation, and evolutionary dynamics. Super-pan-genomes, extending across species boundaries, further enable comparative analyses of clades or genera, bridging breeding applications with evolutionary insights (Shang et al., 2022; Li et al., 2023a). However, the absence of standardized practices for data generation, analysis, and sharing hinders reproducibility and interoperability. This white paper presents a harmonized framework developed by the ELIXIR E-PAN consortium, addressing nomenclature, quality control (QC), data formats, visualization, and community practices. By adopting these guidelines, researchers can enhance FAIR (Findable, Accessible, Interoperable, Reusable) compliance, foster collaboration, and accelerate translational applications in crop improvement and evolutionary biology. plant pan-genome white paper standards quality control rastlinski pangenom standardizacija kontrola kvalitete ontologije metapodatki true false true Angleški jezik Slovenski jezik Neznano 2026-02-24 10:12:49 2026-02-24 10:12:49 2026-02-25 03:50:44 0000-00-00 00:00:00 2025 0 0 Soavtorji: Pedro Barros, Sebastian Beier, Heidrun Gundlach, Jorge Alvarez-Jarreta, Keywan Hassani-Pak, Patrick König, Anne Fiebig, Tim Godec, Kristina Gruden, Nadja Nolte, Marko Petek, Uwe Scholz, Maja Zagorščak, Klaas Vandepoele, Michiel Van Bel; Nasl. z nasl. zaslona; Opis vira z dne 4. 2. 2026; str. 1-10 [article no.] 739 Vol. 14 2025 0000-00-00 Zaloznikova Objavljeno NiDoloceno 0000-00-00 0000-00-00 2025-11-18 577.2 2046-1402 10.12688/f1000research.166538.2 267262979 https://f1000research.com/articles/14-739/v2 1 ff72e26f-1160-11f1-9cb0-001a4af901a5 https://dirros.openscience.si/Dokument.php?lang=slv&id=40762 RAZ_Heuermann_Marc_C._2025.pdf RAZ_Heuermann_Marc_C._2025.pdf 1 221366E620A6DF806CE699FB0CB9704F 6bf138e9e76380788c19c9f23f1df80ddcfa46a9e83c2df20c9f15dcfcef9064 89381035-1161-11f1-9cb0-001a4af901a5 https://dirros.openscience.si/Dokument.php?lang=slv&id=40764 Nacionalni inštitut za biologijo 0 0 0