20.500.12556/DiRROS-21370 Haplotype-resolved genome assembly of the tetraploid potato cultivar Désirée Cultivar Désirée is an important model for potato functional genomics studies to assist breeding strategies. Here, we present a haplotype-resolved genome assembly of Désirée, achieved by assembling PacBio HiFi reads and Hi-C scaffolding, resulting in a high-contiguity chromosome-level assembly. We implemented a comprehensive annotation pipeline incorporating gene models and functional annotations from the Solanum tuberosum Phureja DM reference genome alongside RNA-seq reads to provide high-quality gene and transcript annotations. Additionally, we provide a genome-wide DNA methylation profile using Oxford Nanopore reads, enabling insights into potato epigenetics. The assembled genome, annotations, methylation and expression data are visualised in a publicly accessible genome browser, providing a valuable resource for the potato research community. cultivar Désirée potato functional genomics genome assembly annotation pipeline DNA methylation epigenetics true false true Angleški jezik Ni določen Neznano 2025-01-28 07:56:41 2025-01-28 07:56:42 2026-03-03 03:52:35 0000-00-00 00:00:00 2025 0 0 Nasl. z nasl. zaslona; Opis vira z dne 24. 1. 2025; Soavtorji: Sebastian Beier, Natalia Yaneth Rodriguez-Granados, Rashmi Sasidharan, Lamis Abdelhakim, Markus Teige, Björn Usadel, Kristina Gruden, Marko Petek; Str. 1-8 [art. no.] ǂ1044 iss. 1 2025 0000-00-00 Zaloznikova Objavljeno NiDoloceno 0000-00-00 0000-00-00 2025-06-20 575.111 2052-4463 10.1038/s41597-025-05372-3 223886083 https://doi.org/10.1038/s41597-025-05372-3 1 5d0d106d-160a-11f1-8c73-001a4af901a5 https://dirros.openscience.si/Dokument.php?lang=slv&id=41165 https://doi.org/10.1101/2025.01.14.631659 1 0ce20343-dd45-11ef-ba3f-001a4af901a5 https://dirros.openscience.si/Dokument.php?lang=slv&id=30423 RAZ_Godec_Tim_2025.pdf RAZ_Godec_Tim_2025.pdf 1 C3E28DD9EC77486D35F04AB2AA107FD4 b243e8d2dc56591c5df40d63cf66ae9d81ff68761a77c7be43cd26b2b0bf9a75 7d202935-160a-11f1-8c73-001a4af901a5 https://dirros.openscience.si/Dokument.php?lang=slv&id=41166 Nacionalni inštitut za biologijo 0 0 0