PBPK model code associated to the journal article entitled: "Making PBPK models more reproducible in practice"Domínguez-Romero, Elena (Avtor) Mazurenko, Stanislav (Avtor) Scheringer, Martin (Avtor) Martins dos Santos, Vitor A. P. (Avtor) Evelo, Chris T (Avtor) Anton, Mihail (Avtor) Hancock, John M. (Avtor) Županič, Anže (Avtor) Suarez-Diez, Maria (Avtor) pharmacokineticspharmacodynamicsmathematical modellingstandardsmodel codereproducibilitySBMLMATLABsystems biologyPhysiologically-based pharmacokinetic (PBPK) model code associated to the journal article by: E. Domínguez-Romero, S. Mazurenko, M. Scheringer, V. A. P. Martins dos Santos, C. T. Evelo, M. Anton, J. M. Hancock, A. Županič, M. Suarez-Diez, entitled: Making PBPK models more reproducible in practice (Briefings in Bioinformatics, Volume 25, Issue 6, November 2024, bbae569, https://doi.org/10.1093/bib/bbae569). The code is provided in MATLAB and SBML formats. The following files can be found here: "PBPK_code_EDR_et_al_vs4.m": model code in MATLAB format. This is the 4th version of the code. The mathematical model is described by Domínguez-Romero et al., and more succinctly explained within the code (annotations). When this code is run in MATLAB, we obtain the next file: "Model_variables_numeric_results.xls": numeric results obtained by model simulation in MATLAB. "SM2_PBPK_code_EDR_et_al_final4_test_trigger.xml": model code in SBML format, obtained by conversion of the MATLAB code, by using "Model ODE Converter for Creating Automated SBML Interoperability (MOCCASIN)” (Gómez et al., 2016) and COPASI tools (Tiwari et al., 2021). More details about the conversion can be found in Domínguez-Romero et al. (2024).Zenodo20242026-05-08 14:22:33Neznano29333sl